PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009281-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 293aa MW: 32540.3 Da PI: 9.7376

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009281-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl AHYPO_009281-RA 45 KQRLRWTEDLHNRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.846	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-26	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-8	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-24	132	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MYHAKKFSTV SLVPHKMQGS EPVSNAGAMG SSSVKSSPPP GGSGKQRLRW TEDLHNRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPSDG SKDEKKGSLD 120 GLTNPESSQG LQINEALKMQ MEVQKRLHEQ LEVQRQLQMR IEAQGKYLQK IIEEQQKLGS 180 VLKASDSLPS SSNQDEEREK SSNSQPVREH SPSPTSPRKK QKLDHSSTSN IDTVSVPSKN 240 SPKKDFLDQW DQNIYGSAAG FGLDFESEFK KQENNEHEQR ISSESDFPRS SK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673243.1	0.0	PREDICTED: myb family transcription factor PHL7 isoform X2
Swissprot	Q9SJW0	3e-74	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0K9R7H4	1e-151	A0A0K9R7H4_SPIOL; Uncharacterized protein
TrEMBL	A0A0K9R8Z4	1e-151	A0A0K9R8Z4_SPIOL; Uncharacterized protein
STRING	XP_010673242.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-76	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009281-RA