PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009240-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 802aa MW: 88205.9 Da PI: 5.981

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009240-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	287	5.3e-88	440	800	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +++L+++A+ + +g+++laq++Larl+++ s + +p+ R+a+y++eAL+ l+ ++ + +a pp++ ++++ +++++a+klfsevsPi +f + AHYPO_009240-RA 440 KDQLFKAADLILTGNFSLAQEILARLNHQLSLT-KPFLRAASYVKEALQMLLLM-GNPV-SAPPPKTLTPYDIVHKMNAYKLFSEVSPITQFVN 530 689***********************99875.8************997.5555.5789999999******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rle 187 +t qaIlea++ ++++HiiDfdi+ G+QW++L+q+L R++g+psl+iT++++++s+++ el+ ++e+L +fA+e+gv fe +v+ + + + AHYPO_009240-RA 531 FTSTQAILEALDDSDAIHIIDFDIGCGAQWASLIQELPLRKRGAPSLKITAFAPMSSSNHFELSLIRENLLQFANEIGVAFELQVINLDlfDPS 624 *********************************************************************************955522233 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 + ++ ++r +++Ea+aV++ + ++ + +s +++L+++k+ sPk+vv ++ d+ + F ++++++l+ +++l++sl+ + + AHYPO_009240-RA 625 SCSMPNFRSSEDEAIAVSIPIWSFSN--R----PSILPTILEFIKQRSPKIVVSLDRGFDRFDVAFPQHLVHTLDSCTSLLESLDGL-NVAPDI 711 33455566666***99944443..3....344557*****************************************654.345678 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +kvE+++++++i+n v + e++ +W++ + ++GF p ++s+++++qa++++++ +++g++ve++++slvl W++r+Lv++SaWr AHYPO_009240-RA 712 VSKVEKFFIQPRIENTVLGRVHF----PEKMPHWKNLFASSGFLPFQFSNFTETQADYVVKRNPGRGFHVEKRQASLVLSWQRRELVAASAWR 800 99***********987665....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.629	413	780	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-85	440	800	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MMQTMPYNLQ GKGVVEVSSL ISQISPPNWK SLDKLHLQQQ QNSLTNQVLE EEFVEENQQK 60 QISASVRETS SIESEPTSTL ETTRRSPSTH TSTSTLSSSF TDKTSVLEPA GVADPACARK 120 EDWSSELHHL HPGSESVIIN HNVSANPGSG SGSGVERLGV GSIGMEDWDT MFPNGDGALL 180 PWIIGDSEDP SLGLKHLLQS GSNPCVDYDG VVDQASGFDS QSQNLSPFLS NPQHSIGAVV 240 ASEGNGSSGF VGSEFGGNNA KIGVSPNCSS GVLNGSGKVS NNGLNSLNGM ILSSIPANFP 300 NQFEVGDEKP QIFNPQMVMN SQQAQSVGNP SFLMPPLGYC QLDQHMLQPP TKRHNPGVVL 360 DPNLMVKNPF IDPGHELLLR KQQHQQMGLQ QFPIGFPPQL IAPHLQQKSM MVSKQSHQQQ 420 QQHFPMPVLQ QHQLQEQAIK DQLFKAADLI LTGNFSLAQE ILARLNHQLS LTKPFLRAAS 480 YVKEALQMLL LMGNPVSAPP PKTLTPYDIV HKMNAYKLFS EVSPITQFVN FTSTQAILEA 540 LDDSDAIHII DFDIGCGAQW ASLIQELPLR KRGAPSLKIT AFAPMSSSNH FELSLIRENL 600 LQFANEIGVA FELQVINLDL FDPSSCSMPN FRSSEDEAIA VSIPIWSFSN RPSILPTILE 660 FIKQRSPKIV VSLDRGFDRF DVAFPQHLVH TLDSCTSLLE SLDGLNVAPD IVSKVEKFFI 720 QPRIENTVLG RVHFPEKMPH WKNLFASSGF LPFQFSNFTE TQADYVVKRN PGRGFHVEKR 780 QASLVLSWQR RELVAASAWR C*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MMQTMPYNLQ GKGVVEVSSL ISQISPPNWK SLDKLHLQQQ QNSLTNQVLE EEFVEENQQK  60
QISASVRETS SIESEPTSTL ETTRRSPSTH TSTSTLSSSF TDKTSVLEPA GVADPACARK  120
EDWSSELHHL HPGSESVIIN HNVSANPGSG SGSGVERLGV GSIGMEDWDT MFPNGDGALL  180
PWIIGDSEDP SLGLKHLLQS GSNPCVDYDG VVDQASGFDS QSQNLSPFLS NPQHSIGAVV  240
ASEGNGSSGF VGSEFGGNNA KIGVSPNCSS GVLNGSGKVS NNGLNSLNGM ILSSIPANFP  300
NQFEVGDEKP QIFNPQMVMN SQQAQSVGNP SFLMPPLGYC QLDQHMLQPP TKRHNPGVVL  360
DPNLMVKNPF IDPGHELLLR KQQHQQMGLQ QFPIGFPPQL IAPHLQQKSM MVSKQSHQQQ  420
QQHFPMPVLQ QHQLQEQAIK DQLFKAADLI LTGNFSLAQE ILARLNHQLS LTKPFLRAAS  480
YVKEALQMLL LMGNPVSAPP PKTLTPYDIV HKMNAYKLFS EVSPITQFVN FTSTQAILEA  540
LDDSDAIHII DFDIGCGAQW ASLIQELPLR KRGAPSLKIT AFAPMSSSNH FELSLIRENL  600
LQFANEIGVA FELQVINLDL FDPSSCSMPN FRSSEDEAIA VSIPIWSFSN RPSILPTILE  660
FIKQRSPKIV VSLDRGFDRF DVAFPQHLVH TLDSCTSLLE SLDGLNVAPD IVSKVEKFFI  720
QPRIENTVLG RVHFPEKMPH WKNLFASSGF LPFQFSNFTE TQADYVVKRN PGRGFHVEKR  780
QASLVLSWQR RELVAASAWR C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-25	474	800	39	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853011.1	0.0	scarecrow-like protein 6
TrEMBL	A0A0K9RSB8	0.0	A0A0K9RSB8_SPIOL; Uncharacterized protein
STRING	XP_010695123.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-103	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009240-RA