PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009198-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 276aa MW: 29721.8 Da PI: 6.5033

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009198-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H AHYPO_009198-RA 182 HECSICGSEFPSGQALGGHMRRH 204 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.448	120	147	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.7E-11	120	144	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.3	120	142	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.56E-7	120	142	No hit	No description
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.56E-7	177	204	No hit	No description
Pfam	PF13912	1.3E-12	181	206	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	182	204	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.803	182	209	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDYSTEEDFS TFTTKRRRTK RHRSLLSASA SASSTYCGAS DAAAIVTAAA SDPPNKPTAT 60 SSTSYTSSSS ASPSDHLHDV MSEVTIEEID MANFLILLSQ GLHKNTNTNT NTNTNNTVLY 120 ECKTCYRTFS SFQALGGHRT SHKKIKPPLS PSIIPSTDHH NTDNIDTKIK IVDNKVMRDR 180 VHECSICGSE FPSGQALGGH MRRHRAAAPT PSSAEISPDG STEVMDTGGG GPRNILSLDL 240 NLPAPDDQDG QPDDHMENTF VHVLPRPAPL VDCHN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848233.1	1e-75	zinc finger protein ZAT5-like
TrEMBL	A0A0K9RQ88	3e-74	A0A0K9RQ88_SPIOL; Uncharacterized protein
STRING	XP_010689246.1	2e-60	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-32	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009198-RA