PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009096-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 782aa    MW: 85198.5 Da    PI: 6.5026
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009096-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.3e-172174453
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53
                       ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR+
  AHYPO_009096-RA 21 YVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRY 74
                     6789*************************************************7 PP
2START169.42.4e-531143222205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v s++  g+++l
  AHYPO_009096-RA 114 IAEETLTEFLSKATGTAVEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVSLEPT-RVAEILKDRLSWYRDCRAVDVMNVMSTAngGTIEL 206
                      789*******************************************************.9999999999****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       + +l+al++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h+dl+ + ++++lr+
  AHYPO_009096-RA 207 LYLQLYALTTLAPaRDFWLMRYTSLLEDGSVVICERSLNNTQNGPSmpsVQHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWRVPEVLRP 300
                      *********************************************9888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s++  +++t++a+l+++++
  AHYPO_009096-RA 301 LYESSTLLAQRTTMAALRQLRQ 322
                      ******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.9771579IPR001356Homeobox domain
SMARTSM003899.9E-111783IPR001356Homeobox domain
SuperFamilySSF466898.55E-151975IPR009057Homeodomain-like
CDDcd000866.38E-152074No hitNo description
PfamPF000465.5E-152174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-162374IPR009057Homeodomain-like
PROSITE profilePS5084824.775104319IPR002913START domain
CDDcd088754.00E-75108323No hitNo description
Gene3DG3DSA:3.30.530.201.4E-21112319IPR023393START-like domain
SuperFamilySSF559611.07E-33113323No hitNo description
SMARTSM002345.4E-37113323IPR002913START domain
PfamPF018529.5E-51114322IPR002913START domain
PfamPF086702.2E-51638780IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MMAVSSACRD ANKMGADAGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRYDAPTLA TTDTSCESVV TSGQQQATSQ RPPKDASPAG LVSIAEETLT  120
EFLSKATGTA VEWIQMPGMK PGPDSIGIIA ISHGCTGVAA RACGLVSLEP TRVAEILKDR  180
LSWYRDCRAV DVMNVMSTAN GGTIELLYLQ LYALTTLAPA RDFWLMRYTS LLEDGSVVIC  240
ERSLNNTQNG PSMPSVQHFV RAEILPSGYL IRPCEGGGSI IHIVDHMDLE PWRVPEVLRP  300
LYESSTLLAQ RTTMAALRQL RQISQEISQP NVAGFGRRPA ALRGFSQRLS KGFNEAVNGF  360
IDDGWSMMDG DGIDDVTLLV NSSPSKMMGA NQFYNNEFPS VGTAVLCARA SMLLQNVPPA  420
VLLRFLREHR SEWADSGIDA YAAAAVKAAP CAIPVARTGC VGGQVILPLA HTIENEEAIH  480
GSCSARKSWP LSGRHVHTRR HISTSGACAE LIFAPIDASF SDDAPLLPSG FRIIPIDSSK  540
DVSSPKCTLD LTSALEVGST GNKAQGDSNG SGSGKSVMTI AFQFAFEIHL QESVASMARQ  600
YVRSIISSVQ RVASALSPSR FGSLNGSPLS PGTPEAQMLA RWICQSYRFY LGVELLKPNN  660
EGGDSVLKSL WHHSDAILCC SLKALPVFTF ANQAGLDMIE TTLVALQDIT LEKIFDEQGR  720
KTLFTELPQI MQQGFICLQG GICISSMGRP ISYERAVAWK VFNDAEDAQC MCFMFINWSF  780
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739137.10.0homeobox-leucine zipper protein ATHB-8-like
RefseqXP_021739138.10.0homeobox-leucine zipper protein ATHB-8-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9QMP50.0A0A0K9QMP5_SPIOL; Uncharacterized protein
STRINGXP_010668539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]