PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009070-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 283aa MW: 31810.8 Da PI: 9.072

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009070-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.7e-34	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl AHYPO_009070-RA 37 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-32	34	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.347	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-16	36	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-24	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-8	39	89	IPR001005	SANT/Myb domain
Pfam	PF14379	9.7E-25	136	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MFHHPKKLPS SMNPNERTNT SMCVQNDSGL VLTTDPKPRL RWTVELHERF VDAVTQLGGP 60 DKATPKTIMR VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN DHSVKDHGMR ASALELQRSS 120 ASSSGLMRPN MNDSNVHISD AIRMQMEVQR RLQEQLEVQR HLQLRIEAQG KYMQNILEKA 180 CQTLAGETNV NMAAASASYN NKGIIPNNNN NNNNLLSNNN PSTMAAADHH LGPSLKEFGP 240 MNFPSFQDLN IYGNGGDQPL DLHQGMDRSS SFENYMQVPN DNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021731220.1	1e-155	myb family transcription factor APL-like isoform X1
Swissprot	Q9SAK5	3e-99	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0K9RP23	1e-141	A0A0K9RP23_SPIOL; Uncharacterized protein
STRING	XP_010683574.1	1e-148	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-81	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009070-RA

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]