PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009054-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 216aa    MW: 24368.4 Da    PI: 5.9626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009054-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-0760971154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +RR+++ ++f++Lr++  +      +  +Ka+iL kA+++I++L
  AHYPO_009054-RA 60 KRRADLDDKFQQLRSVTNS------TSANKASILVKATNHIREL 97
                     7*************99655......579**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-960110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-56097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.11E-760102No hitNo description
SuperFamilySSF474591.7E-860115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MIWSTTLSCN IRQIHKRFDI YKAEALSPSH ILRASVLERE RERSGQRNIL TNFEEMSKDK  60
RRADLDDKFQ QLRSVTNSTS ANKASILVKA TNHIRELKDK IERLNQELGS TSTYPNTQNQ  120
HQQDSFPKVN VETLENMFTV NVESEQNCPG LLLTIIQVFE ELGLDVLNAE AACNHGFELA  180
AHGVWNDGVE SLDAETVKEV VIQAIRKWMS GTASP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731301.13e-55transcription factor bHLH61-like
TrEMBLA0A2R6RRT07e-46A0A2R6RRT0_ACTCH; Transcription factor bHLH61 like
STRINGXP_010683554.14e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.14e-10bHLH family protein