PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008937-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 339aa    MW: 38591.9 Da    PI: 5.4491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008937-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1530121198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk  +++ +  s  l++p +fa+++++    s t++l+ ++g++W+v +  +   ++ ++  GW+eF +  +++   f++F+++g+s+f  +v
  AHYPO_008937-RA  30 FFKLIISPTSQ-SEKLRIPEEFARKIQHT--LSSTISLKLPTGETWKVGI-LKEENCMLWMHHGWQEFMEHFNIQYAYFLLFEYEGNSNF--TV 117
                      66766555555.556***********855..888****************.6788889****************************9999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  AHYPO_008937-RA 118 LIFN 121
                      8886 PP
2B355.69.8e-18234331399
                      EE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   3 kvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       +l+++++l++   l +p +f+ ++  g k +e k ++le   g++W+v++i  +++  +++++GW  F+++ gL++gD +vF+l++ ++  l+
  AHYPO_008937-RA 234 ITLIKHYALERsMFLNIPVSFCHKYlvGTKRKEVKLIKLEAYGGKQWTVRCISFRSK--CTFGAGWIIFARDEGLEVGDACVFELTDANNYVLK 325
                      5677778877734569**********96666677899**************665555..679**********************9987888788 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v v++k
  AHYPO_008937-RA 326 VDVVKK 331
                      888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2026125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-2027125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-1428121No hitNo description
PROSITE profilePS5086313.05629123IPR003340B3 DNA binding domain
PfamPF023629.2E-1330121IPR003340B3 DNA binding domain
SMARTSM010199.3E-1430123IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-17230331IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-18230332IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-18231330No hitNo description
SMARTSM010195.3E-13232332IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83233332IPR003340B3 DNA binding domain
PfamPF023621.9E-14234330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKRTIPNNSE DGKLINENGV TKPNPNPFYF FKLIISPTSQ SEKLRIPEEF ARKIQHTLSS  60
TISLKLPTGE TWKVGILKEE NCMLWMHHGW QEFMEHFNIQ YAYFLLFEYE GNSNFTVLIF  120
NPTGCEISYA TSEQKQETLP INIQNLEDDV VHHNNPEILN SSSNSITPEP EVIQLYSDDD  180
DDDNTKVLHS SLSKSENFGE ESTTIGRSIT AEEERLMKAI VSAGISLPIR PYFITLIKHY  240
ALERSMFLNI PVSFCHKYLV GTKRKEVKLI KLEAYGGKQW TVRCISFRSK CTFGAGWIIF  300
ARDEGLEVGD ACVFELTDAN NYVLKVDVVK KSQIGELV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1519733015141B3 domain-containing transcription factor VRN1
4i1k_B4e-1519733015141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-49B3 family protein