PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008908-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 158aa    MW: 17972.7 Da    PI: 9.4774
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008908-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.5e-23957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien+s r vtfskRr g++KKA+E+++LC+a++a+i+fs+ gk y +
  AHYPO_008908-RA  9 KKIENNSSRLVTFSKRRSGLFKKANEICTLCGAKIAIIVFSPGGKPYSF 57
                     68******************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.829161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-35160IPR002100Transcription factor, MADS-box
CDDcd002653.58E-35272No hitNo description
SuperFamilySSF554551.24E-29282IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGRKKVEMKK IENNSSRLVT FSKRRSGLFK KANEICTLCG AKIAIIVFSP GGKPYSFGHP  60
SIEQVLHEYQ NDFTPKKSKS HKVRIAKLRQ ELANLDDLLE YESKVEFMKN QSISQLDLDQ  120
LVELQEQMQD LSRNATRHVQ EIEASQALLM LANSSFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-15190190MEF2 CHIMERA
6bz1_B4e-15190190MEF2 CHIMERA
6bz1_C4e-15190190MEF2 CHIMERA
6bz1_D4e-15190190MEF2 CHIMERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667929.16e-61PREDICTED: agamous-like MADS-box protein AGL29
STRINGXP_010667929.12e-60(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-30M-type_MADS family protein