PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008895-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 300aa    MW: 32040.4 Da    PI: 6.7667
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008895-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3098151155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  AHYPO_008895-RA  98 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 151
                      59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.78E-2095155IPR009057Homeodomain-like
PROSITE profilePS5129411.05995154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3097156IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2499151IPR006447Myb domain, plants
PfamPF002491.1E-7101150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MREEDSNWFS KWEEQLPSPD ELISLSQTLI TPDLASVFDI QIHGSNGNIP MSTSPHMHPN  60
SSEFDSSSAE LNGGGEGGGG GSTSGGGGSD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI  120
KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGIN NGNGPGNGLG GSGDSATDNL  180
FASSPVPAHF LHGPGGGGGG ARPNSEHFMP YIALNHHQLM PGHQPVTAQY QHHRQMGHFG  240
SGQNGGHGQF EHPFLSRQAQ SGPNRNGMMQ NNSGFIEDLE SATVNNGRKV LTLFPTGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-3498154157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673075.11e-134PREDICTED: transcription factor PCL1
SwissprotO222102e-59MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0K9QBX61e-131A0A0K9QBX6_SPIOL; Uncharacterized protein
STRINGXP_010673075.11e-133(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-65G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]