PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008855-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 456aa    MW: 50247.3 Da    PI: 7.4357
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008855-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.89.5e-08166213552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      k  rr+++NReAAr+sR+RKka++  + +  ++   + ++L +el++ 
  AHYPO_008855-RA 166 KSLRRLAQNREAARKSRLRKKASLLAYVQQLENSRLKLTQLEQELQRA 213
                      788******************998888777766666666666666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.6E-5158213No hitNo description
SMARTSM003380.0047162229IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-5166216No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
PfamPF141443.0E-32253327IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGSRIVKKIG SKNGASLTSG MPSFNPAIPI SNSIVAEGNN SNISRVPEIG VFEQSLDFRM  60
EDDVDFRHPV FSSLKSSSLT AGPDLQFGSF NKVLSLEKES HLNFASVSGG HRENWAESNM  120
ADASPRTDTS TDEADDRHPQ LEVGQINTKT ASDSSDRSKE KALDQKSLRR LAQNREAARK  180
SRLRKKASLL AYVQQLENSR LKLTQLEQEL QRARQQGIFI SNSGDQSHAI GGNGALAFDA  240
EYARWVEEQN RMINELRSAV NSHASDTELH TVVESVAAHF NDIFRLKGVA AKSDVFHILS  300
GMWKTPAERC FMWIGGFRPS ELLKLLVNQL EPLTEQQLVG IYSLQQTSQQ AEEALSQGME  360
ALQQSLAETL ANGTPGPSGS SGNVANYMGQ MAMAMGKLGT LEGFLRQADN LRQQTLQQMH  420
NILTSRQSAR ALLSIHDYFS RLRALSSLWL ARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673021.10.0PREDICTED: transcription factor TGA2.3 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0K9R1810.0A0A0K9R181_SPIOL; Uncharacterized protein
STRINGXP_010673021.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-151TGACG motif-binding factor 6