PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_008837-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27458.7 Da PI: 5.0403 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 6e-21 | 81 | 129 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++aa+kk++g AHYPO_008837-RA 81 YRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAAAKKIRG 129 9*******.**********954...4*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-23 | 80 | 138 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.843 | 80 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.98E-21 | 80 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-38 | 80 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-12 | 81 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-15 | 81 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-12 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MCGGAIISDL IAGNHGRRRN LTTQDLWSQL DVDLLTSSNF SPKPYSPSQF GLPIDGVKTS 60 NNPVEEVPKP IPNRRTRKNI YRGIRRRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY 120 DAAAKKIRGD KAKLNFPEET CPTPPASKRQ CMSNSSESTQ LSYDSVESTQ LPVMNMDNWE 180 DIETVIGMQN EVERQMSELE SILGLSHDSS NKLGESDSVD FCWAMDEFIP MVNYDEHNDN 240 DKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-23 | 81 | 139 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 87 | RRTRKNIYRGIRRRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667125.1 | 7e-85 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0J8B3N9 | 2e-83 | A0A0J8B3N9_BETVU; Uncharacterized protein | ||||
STRING | XP_010667125.1 | 3e-84 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-45 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_008837-RA |