PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008816-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 1167aa    MW: 129505 Da    PI: 9.4668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008816-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE + +++a +++G++ Wk++a  +  +Rt +++
  AHYPO_008816-RA 46 QWSKEELQSFYEAYRKYGKD-WKKVATAIR-NRTIEMV 81
                     6*****************99.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-104290IPR009057Homeodomain-like
SMARTSM007178.0E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-54680IPR009057Homeodomain-like
PfamPF002495.5E-84681IPR001005SANT/Myb domain
CDDcd001679.50E-64781No hitNo description
PROSITE profilePS500906.0864777IPR017877Myb-like domain
SMARTSM011357.4E-58640741IPR033471DIRP domain
PfamPF065841.4E-31640740IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1167 aa     Download sequence    Send to blast
MAPTRKSRSV NKRFPYPSEI SPSKDGESAN KSNKRKRKVS DMLGPQWSKE ELQSFYEAYR  60
KYGKDWKKVA TAIRNRTIEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGSDS  120
EQESNDGVEI PRKPQKRTRG KLHPNMAGNF SDVSHSQSVA SSYGCLSLLK KKRSGGNQPR  180
AVGKRTPRVP VRYTYDKDNI GRYISPVRQG LKKLDVADED VAHEVALALA EASHRGGSPQ  240
ISQTPNKRRE VTSKLPVGER LCSESEMTSA KNIGNEVNDD GCEGSLGSTE GDNNFSREKR  300
QSGARKGVGT VAQQKAKRSY GKKVEVEDSE HQYGDDIKEA CSGTEGGQKY PSFELKLGPD  360
TRDLICTRSS GQTSKKRSKK VLFGGDEGVA LDALQALADL SLLMPSSTAE AESTVPIKKE  420
NEVDVDKFKQ PDTVTTSLRV KPKASPSKKK GDQSVPQSRG SESTKYKPGK ASSPNSSPVT  480
EPKDSNARKR KSKPSVSRNA TSEFRMHSDA NAVPEMEFSD QGVKSVYKSR RLSHNASQQL  540
GQLVRIAEHS SSSTDIRKDV DDSAISSIQA SELTKINAPT KSRSRRKMDK SLIIKADTFV  600
NEQPNISEQF YHDKTMHPKE RLCNCLLNHS VRKWCIYEWF YSAIDYPWFA KSEFVEYLYH  660
VGLGHVPRLT RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLA YYRESVRSHY TELRMGKREG  720
LPTDLARPLT VGQRVIAIHP RSREIHNGNV LTVDHNRCRV QFDRPELGVE FVKDIDCMPL  780
YPSENMPTSL LRHNACNDKF CEALKQFSAS QRSSDRMKEE NIIIDPSQKV GSVEGPSNVS  840
PIYVMSNLPK QAKEGYVSPM SHKKNGHIEV ISPQQALTLQ QSSGSPMQTK EADIRALAEL  900
TRALDKKNAL VTELKRMNDD VSEDNTLKNV DSFKKQYAAV LVSSALICLR QRNTYQGNSL  960
VPWQKTKISL EDHGNIVGSV GPLNGLPGNT QGTGSHACEI VDTSRIKARR MVDDALQAVT  1020
SLKVEVDSVQ TIEEVIDFVN TRLLVDDSGI PTQTSQLNGS ATLQNQSSSC TSTVVNSDLA  1080
LDSKSNCASV RCELHIPSEL IANCVATLLM IQKCTERQFP PAEVAQILDL AVTSLQPRSS  1140
QNIPIYTEIQ KCMGIIRSQI LALIPT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667784.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A0J8DWA10.0A0A0J8DWA1_BETVU; Uncharacterized protein
STRINGXP_010667784.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding