PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008679-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 359aa    MW: 40225.1 Da    PI: 7.2469
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008679-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-333892155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  AHYPO_008679-RA 38 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 92
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3473595IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-323593IPR009057Homeodomain-like
SuperFamilySSF466891.63E-163793IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-233893IPR006447Myb domain, plants
PfamPF002491.1E-74090IPR001005SANT/Myb domain
PfamPF143791.4E-24134181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFHHPKKLPS SMNSNERNNS SSMCVQNDSG LVLTTDPKPR LRWTVELHER FVDAVTQLGG  60
PDKATPKTIM RVMGVKGLTL YHLKSHLQKF RLGKQPHKEF NDHHSVKDAS SLELQRPHAA  120
SSSGLMRPSM NDNVHISDAI RMQMEVQRRL QEQLEVQRHL QLRIEAQGKY MQNILEKACQ  180
TLAGESNMAA SPTTHINKTN NNNNNTHNLL SSNNPSNMAA DPLGGSIREF GSMNFPSFQD  240
LNIYGGDPSL DLHQGMDRSS SLENFMQVPS DDHSLCLGKK RVNPFNSNNG KSPLIWGDDH  300
IRIQELGAPL NSQDHHHHQQ DPFKIDIQIG PPDHRIDSIS DQIYESKPLL ANDISVGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-193894258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731223.10.0myb family transcription factor APL-like isoform X4
RefseqXP_021766159.10.0myb family transcription factor APL-like isoform X2
SwissprotQ9SAK52e-96APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0K9RP231e-168A0A0K9RP23_SPIOL; Uncharacterized protein
STRINGXP_010683574.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.25e-73G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]