PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008631-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 277aa MW: 30277.2 Da PI: 6.9577

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008631-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H AHYPO_008631-RA 98 FSCNYCQRKFYSSQALGGHQNAH 120 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.95E-6	95	125	No hit	No description
PROSITE profile	PS50157	11.427	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEQTSLEPCL SDTSSTISAA HEGVPRFFSR TLQYQQRKPA VEHQDRDQEQ EIETVSWNES 60 DSCHEFNGEL NLIDCLKVGS SQSSTETPQG SESEPRVFSC NYCQRKFYSS QALGGHQNAH 120 KRERTIAKRN QRIGATIAAT AAAFGHPYLH HHQQQPSYSN IASLPLHGSS PNRSLGIQVH 180 SMIHKQPLSN MSPTMSSSGN VYGHHGWSRL PIEQQPAVGK LVLDTYHSSA PVGPTSRGGA 240 GRFGVDEGVS SGWWSGDSPI KSNHEDSTKL DLSLSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665880.1	1e-131	PREDICTED: zinc finger protein 3
TrEMBL	A0A0K9QCL9	1e-118	A0A0K9QCL9_SPIOL; Uncharacterized protein
STRING	XP_010665880.1	1e-131	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-48	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_008631-RA