PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008630-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 288aa MW: 31767.2 Da PI: 8.3486

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008630-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H AHYPO_008630-RA 111 FSCNYCQRKFYSSQALGGHQNAH 133 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.35E-6	108	138	No hit	No description
PROSITE profile	PS50157	11.427	111	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEKKQQRKEH PKMEETELEP CLSGTSSSIS AAQGVPRLFG RPLKYQQQKA AIESQDKDQN 60 QDQEKETASW NESDSCHEYN GELNLIDGIK VGSSQSSTET PQGSESEHRV FSCNYCQRKF 120 YSSQALGGHQ NAHKRERTIA KRNQRIGATI AATAAAFGHP YIHHQQQPSY SNIASLPLHG 180 SLNRSLGIQV HSMIHKQPPS NMSPAMSSSR NVYGHHGWLR LPIEQQPAVG KLVLDTYHSS 240 VPVGPTSRGG AGRFGVDEGV TNFWWSGDIP IKTNHEDSTK LNLSLSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665880.1	1e-120	PREDICTED: zinc finger protein 3
TrEMBL	A0A0K9QCL9	1e-111	A0A0K9QCL9_SPIOL; Uncharacterized protein
STRING	XP_010665880.1	1e-120	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-40	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_008630-RA