PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008619-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 416aa    MW: 45881.3 Da    PI: 6.5534
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008619-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-083643972154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  AHYPO_008619-RA 364 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 397
                      469*****************************87 PP
2ELK29.31.9e-10318339122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+ +++++++E++
  AHYPO_008619-RA 318 ELKHELKQGYKDKIVDIREEIL 339
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-18113157IPR005540KNOX1
PfamPF037905.4E-17115153IPR005540KNOX1
SMARTSM012562.7E-25168223IPR005541KNOX2
PfamPF037918.8E-19172222IPR005541KNOX2
PROSITE profilePS512139.969318338IPR005539ELK domain
SMARTSM011885.1E-4318339IPR005539ELK domain
PfamPF037891.4E-5318339IPR005539ELK domain
PROSITE profilePS5007111.726338401IPR001356Homeobox domain
SuperFamilySSF466893.34E-16340404IPR009057Homeodomain-like
SMARTSM003892.4E-11340405IPR001356Homeobox domain
CDDcd000861.16E-12341402No hitNo description
Gene3DG3DSA:1.10.10.602.8E-25345402IPR009057Homeodomain-like
PfamPF059201.2E-17358397IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAFHHNHHLS QAEMAAQFGG DHTTSSNHHH QPNWLTSALL NSSAVAGGAG NFLNLQSVED  60
SAGMSTIPSQ PGELTHNEDS GKPEIGDGET STGAGNSGGG SEQQQQQVNW QNAKFKAEIL  120
AHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLALSQNVVA KYSALGNGHA LVGDDKELYQ  180
FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGRPSGIMF VLVRSGSLVS  240
HINLWLCYAV SLTVVLFSDK RVSPGEGTGA TMSDDEDDPI DSDSNLFDGG LDGSDAMGFG  300
PLIPTESERS LMERVRQELK HELKQGYKDK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ  360
SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSSSTASK SKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12341405872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394414RKRNWHSNPSSSTASKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769404.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_021769405.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-174KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0K9R9E20.0A0A0K9R9E2_SPIOL; Uncharacterized protein
STRINGXP_010665744.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-150KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]