PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008565-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 412aa    MW: 44867.1 Da    PI: 4.7975
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008565-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1092.4e-34253307155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWtpeLHe+Fv+av+qLGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+
  AHYPO_008565-RA 253 KTRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 307
                      68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.152250310IPR017930Myb domain
SuperFamilySSF466893.05E-18251307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-32251308IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24253307IPR006447Myb domain, plants
PfamPF002492.9E-10255306IPR001005SANT/Myb domain
PfamPF143793.8E-8340374IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEMNMRSALP MQVSGGNCFN DLEVPASYSS PLPSLTNPLV DFPKSPDPFL ISSSREIIAS  60
PVQMQANPIV SHIGASSSGS QFLGGFPADM QFPSFSPRGT LPQSSSFISP SAGSGADFPP  120
NHVTLSDVQP TGLFNFQKDD DDHSWSTGQF QELLDLPEGV SMVDGHVGNS GEVMSSESNV  180
KRIGWQELDL YADSIEPNWN ELLADSNVVD QQSKMPQSSS DIVLPQAPMP QQLPLPSKEA  240
SSSANPTSGS QNKTRMRWTP ELHEAFVDAV NQLGGSERAT PKGVLKLMNV EGLTIYHVKS  300
HLQKYRTARV RPESSEGNSE KKCSSIDQVS SVDLKTSITI TEALRMQMEI QRKMQLQIEE  360
QGKYLLQMLE NQNKAEKEKL KSSDKPEVSA NEANGSGSPP MKRIRTDDSG H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-32253311260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2199722e-72AF219972.1 Mesembryanthemum crystallinum CDPK substrate protein 1 (csp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864753.10.0myb family transcription factor PHL13-like
TrEMBLA0A0K9QCD60.0A0A0K9QCD6_SPIOL; Uncharacterized protein
STRINGXP_010675144.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.14e-66G2-like family protein