PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008557-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 134aa    MW: 15289.5 Da    PI: 10.0587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008557-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161472145
                     TSSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwq 45
                     +g+WT++Ed +l+ +++q+G                  W++Ia++++ gRt++++k++w+
  AHYPO_008557-RA 14 KGPWTPQEDHILISYINQFGHSnwralpkhavkngyfGWSSIAARLP-GRTDNEIKNYWH 72
                     79******************99*************************.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-23683IPR009057Homeodomain-like
PROSITE profilePS5129417.673979IPR017930Myb domain
SuperFamilySSF466891.62E-131071IPR009057Homeodomain-like
SMARTSM007172.3E-111377IPR001005SANT/Myb domain
PfamPF002495.9E-141472IPR001005SANT/Myb domain
CDDcd001672.48E-101672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MVRRACCENM GLKKGPWTPQ EDHILISYIN QFGHSNWRAL PKHAVKNGYF GWSSIAARLP  60
GRTDNEIKNY WHITLKKKVK QAQLNTSYSN EITISQNLLG QMSINLDVGS STLSAKDDVL  120
LFWFNLYQNA GKSM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675066.14e-42PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX82e-29MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A118K7K33e-33A0A118K7K3_CYNCS; Uncharacterized protein
TrEMBLA0A2P5C0L41e-32A0A2P5C0L4_TREOI; MYB transcription factor
STRINGXP_010675066.11e-41(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-32myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]