PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008345-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 472aa    MW: 52258.6 Da    PI: 6.1642
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008345-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-40192268177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cqv gC+adls+ k+y+rrhkvC+vh+k+p+v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa hn+rrr++q
  AHYPO_008345-RA 192 CCQVLGCNADLSSFKSYYRRHKVCDVHTKTPKVIVDGIEQRFCQQCSRFHLLGEFDDVKRSCRRRLAAHNKRRRRPQ 268
                      6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.5E-32190254IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.624190267IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-37192270IPR004333Transcription factor, SBP-box
PfamPF031103.9E-31193266IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDKRLVGHIL KWTAICLFNG KLIVMDSWEY VSTGKGLWLS EEVDLLVDNH SKSKMMGCEI  60
KPTVNVENYP LISNTQALER MDFMDLGFAD DVRKSYSISS EPSGEGFSDE IGTDYHPSFG  120
EEKESGSKII SDFMQSNKQD CSFVDLKLGS FVDGGVGEGS ELLRTHVPES SNMSCSPSKK  180
ARPTSLSIRS QCCQVLGCNA DLSSFKSYYR RHKVCDVHTK TPKVIVDGIE QRFCQQCSRF  240
HLLGEFDDVK RSCRRRLAAH NKRRRRPQFT SESGAGIIDF SSSLSFPEVM PNVCLGPTNY  300
KEGNEDSIKN SNFFLQMGCV EEKMDKIPTN DIFGTMKPSL EHTSSIQQSS RALSLLSVGS  360
HSLSSQLLES TSTTLINQTT HVNSDGGHAL NHPETGMFSM EANEEGPTTI NPTNGDTSGL  420
HLSVDDASSK TIMDTDCRHP KGRDMILSLF QLSSHLQRVE NQRHSSENEA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271932661184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249266KRSCRRRLAAHNKRRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680649.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBLA0A0K9RQ591e-160A0A0K9RQ59_SPIOL; Uncharacterized protein
STRINGXP_010680649.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-33SBP family protein