PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_008179-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

CPP

Protein Properties

Length: 305aa MW: 33608.9 Da PI: 7.7031

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_008179-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	34.1	5.6e-11	2	27	13	38
TCR 13 ClkkYCeCfaagkkCseeCkCedCkN 38 ClkkYCeC++a++ Cse C+Ce+CkN AHYPO_008179-RA 2 CLKKYCECYQANVGCSEGCRCEGCKN 27 *************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	8.6E-5	1	31	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	14.765	1	30	IPR005172	CRC domain
Pfam	PF03638	1.3E-7	2	27	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MCLKKYCECY QANVGCSEGC RCEGCKNIYG IKEDYNIARE IMIKRASLEM SEGTTMANSN 60 FPSSRMHNYP HLSPVTPALE CSDQRKNAPK SRLPSRRFMQ TLDSHHDLLT SEERPLSPEI 120 SQYGGVLLEK TKSTDVVALQ AEEVSENTVE KLVGMGDDPI LAPCLKSSDT DVIKSYSRNV 180 SQPHSSAESI PPPPSSVLRW QSSPITPCRQ SVTLDLKDFG AGSEDPDMFQ DDTPEILKHS 240 STTVKSMKVS SPNKKRISPP HHHNNSSESL RSSRKFVLRA VPSFPSLTPY SKTGSNDTKG 300 QPSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021758162.1	1e-126	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0K9QHI4	1e-124	A0A0K9QHI4_SPIOL; Uncharacterized protein
STRING	XP_010670664.1	1e-122	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-12	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	AHYPO_008179-RA