PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008088-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 465aa    MW: 50867.8 Da    PI: 8.115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008088-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16270316455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  AHYPO_008088-RA 270 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 316
                      6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-19264333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-19268325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-14270316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-16271320No hitNo description
SMARTSM003531.1E-17272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSQCIVPNWN LSHPRQDLKQ GEEGNRSSHV DLHTNHNLHF QQQQSFSQLV PMSNFEVTEL  60
TWENGQLAMH ELGGIFPGPA STTTTCPPKP TWGDGVGRAS DTLESMVHQA TYCNNQQSPN  120
LIPTSVAHQQ SGHQKRENIG SSVVGSSGGK RAENSGHMQT TGGPPPTPPG LMKKRTRSES  180
ENCAVRNTTD HEMSACASAN AAFCKDNNNT NDTTMMTWAS YESPRSCTRT KITTDEDSAY  240
HGGSDNQDER YTKGETGRSY TTRKGRAAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD  300
KASMLDEVIE YLKQLQAQVQ MMTNARFMPQ LMMPLGMQQH LQQMSLLARM GMGAGLGMGI  360
GMVDAANQTI PQIMHPTQVA NAASAFVPPA FVVPQMMPAA NQQPNPADPG ASTSAALQDP  420
YSTLLAQSMN IELYNRMAAL QRQQQTSTQP ANNHLQSNPH VQQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678431.10.0PREDICTED: transcription factor PIF7
TrEMBLA0A0K9QNE10.0A0A0K9QNE1_SPIOL; Uncharacterized protein
STRINGXP_010678431.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-31bHLH family protein