PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008047-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 219aa    MW: 24440.8 Da    PI: 10.179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008047-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17103201196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      f  +l+ps+v ++ +l++pk+fa+++ +k+  +++l++   +g s  v ++y   + +s+++v++++Wk Fv +n Lk+ D ++F+l++ se +
  AHYPO_008047-RA 103 FHIILKPSHVENKFCLTIPKEFAAKNLLKEYHKVKLQVAGAEGPSCIVGCRYnirSSTSQKTVFQANWKAFVLDNMLKVHDNLLFELIQASESN 196
                      677899********************99999999******************766666666**************************9875554 PP

                      .EEEE CS
               B3  92 lvvkv 96 
                       v  +
  AHYPO_008047-RA 197 GVSAI 201
                      45555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1696209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1699207IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-17101208No hitNo description
PROSITE profilePS508639.629103210IPR003340B3 DNA binding domain
SMARTSM010192.2E-4103210IPR003340B3 DNA binding domain
PfamPF023621.0E-14103203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MFCNSSLHSN YKDNPKIIKV NQGEDYDYFF RRTTPGTGSK RAKLQHHAKS PPSSPSASGQ  60
HEPKKKIFGS EQRTTTGGAE KGNAWRLAKY QSFQSVKEGL PNFHIILKPS HVENKFCLTI  120
PKEFAAKNLL KEYHKVKLQV AGAEGPSCIV GCRYNIRSST SQKTVFQANW KAFVLDNMLK  180
VHDNLLFELI QASESNGVSA IFRVHIYRAG DENLALSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-07B3 family protein