PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_008010-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 226aa MW: 25194.9 Da PI: 9.7157 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 6.3e-15 | 131 | 216 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +ps+v +l lp +f+++ ++ ++ t+tl de+g+++ v + rk++ l++GW++F+ ++L +gD+vvF+++++s ++++ ++r AHYPO_008010-RA 131 ILPSHVAGCFWLGLPSDFCRSSL-PS-NDGTVTLVDEEGEEYPVVYLARKTG----LSGGWRGFALGHQLVDGDTVVFQVISHS--TMKIYIIR 216 5699999999*********8883.33.3449***************666665....***********************87644..44777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-20 | 122 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-17 | 124 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.77E-22 | 125 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.083 | 127 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-19 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-13 | 132 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGSCSYEERR QKRVEENRKR LEDLNLLHLS QSLKNISPKS SPMKKVGKPR IVEKKMVAVR 60 RSSRVAKNPA PAPVYVEVQY PRLSSPRKSY GVVRGNYEVA TEEERAYTIK VAEKLAAKLD 120 EEGFPTLVRP ILPSHVAGCF WLGLPSDFCR SSLPSNDGTV TLVDEEGEEY PVVYLARKTG 180 LSGGWRGFAL GHQLVDGDTV VFQVISHSTM KIYIIRGKGY EAPQD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021729808.1 | 1e-131 | B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A0K9QC35 | 1e-123 | A0A0K9QC35_SPIOL; Uncharacterized protein | ||||
STRING | XP_010667517.1 | 1e-118 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_008010-RA |