PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007963-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 607aa    MW: 67815.8 Da    PI: 4.8078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007963-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.5e-5261331127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptd+el+++yL+ k++gk+ e+ ++i+evdi++vePwdLp+  ++k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++
  AHYPO_007963-RA   6 LPLGFRFKPTDSELIDHYLRLKINGKESEV-SCIREVDICRVEPWDLPAmsAIKTKDLEWFFFCPRDRKYPNGQRSNRATTAGYWKATGKDRSI 98 
                      699************************999.89***************4347777888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      +sk+  l+g+kktLvfy+grapkg++t+Wv+heyr
  AHYPO_007963-RA  99 KSKRIGLIGMKKTLVFYTGRAPKGQRTHWVIHEYR 133
                      **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-564157IPR003441NAC domain
PROSITE profilePS5100554.9216157IPR003441NAC domain
PfamPF023656.3E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MPFEDLPLGF RFKPTDSELI DHYLRLKING KESEVSCIRE VDICRVEPWD LPAMSAIKTK  60
DLEWFFFCPR DRKYPNGQRS NRATTAGYWK ATGKDRSIKS KRIGLIGMKK TLVFYTGRAP  120
KGQRTHWVIH EYRPTLRELD GSHPGQGAFV LCRLFKKADE VKLEDNDDGS HTDEVEPNID  180
SPNPTYITQD IRSEPAVTQA SPLSVEQSVE QRIATQNPAV KPSNSLASET AFPERAVLNE  240
ETMPEVNSRF IKSGQFDNFP FDKFGLNENL GPGWMDDIFP SEIGDGLNGL LLQDINVQDP  300
FCHWFDSLVD TDAPDYKKAV YQGAVNADND MWKNSSVKEG GSCSGSDVEL AQHQHDVGSV  360
RNGKNIDQQT YNKDPLEDHL WNDNDVFSDA SLYRFCNSQS TSEPSYYAPP LSASSVKTED  420
VTQFVGNREI QIRSRGRQLP QPNFNVQGTA PRRIRFEKGP NLTVTEDGTI PPFDDILCLE  480
DLTENVDGPG SSTDANEVVE TGIEIKTRHL KSQPGVSILV EQGTAPRILH LQANKQSDFC  540
ADATRISSEE INEGKYSDET KCEPDQKSIS SKIPMAVPVV KVVMVISFFI ACCAVWVGRN  600
VFLLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42516014171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858555.10.0NAC domain-containing protein 62-like isoform X1
TrEMBLA0A0K9RVY50.0A0A0K9RVY5_SPIOL; Uncharacterized protein
STRINGXP_010671302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-82NAC transcription factor-like 9