PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007941-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CPP
Protein Properties Length: 717aa    MW: 78097 Da    PI: 6.652
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007941-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.9e-16434471340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnC kskClk+YCeCfaag++C e C+C++C+Nk 
  AHYPO_007941-RA 434 CKRCNCVKSKCLKLYCECFAAGVYCIEPCSCQGCFNKP 471
                      89**********************************96 PP

2TCR512.9e-16518556139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  AHYPO_007941-RA 518 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 556
                      589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-17432473IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.044433558IPR005172CRC domain
PfamPF036383.1E-11435470IPR005172CRC domain
SMARTSM011143.7E-17518559IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11520556IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDTPQKTQIE TPLSAPEDAP FDSPFFNFAS NLSPINPITT IHVSQTIASC SFSSPPSVFT  60
SPHVNIPKGC QLFRPRVLDL AKRTFVVNEG DKDSAAADIT RNDHQIDSLV NVQLRGEGAS  120
GSENSCKAIE DSSECATEPP KEPSGRDSFE TELKSQVVNN ENEETSCDWQ SLIDNNSDLF  180
VFNSPNDVAS SNGPLRKSQH EEANVSASLL ARFPTDQAYG QSSLHVDSCS YNDSLENIEH  240
STQPTGAAEP RQIDETTKNM EISSVNEFLS GDSRENPKIE SLNNLQKGMR RRCLTFEMPR  300
SKKNADSVLS SGSLSALQRE EKPLSNNSQP ITPRVDSSRR IFPSIGLHLN ALAAASKDCG  360
ISNQEMVSPT MQDLLMNSSD LLSLTKEEGP DENRIENAEN SSEASVYLTN EDLYSNSPKK  420
KRKKSETTGE GAACKRCNCV KSKCLKLYCE CFAAGVYCIE PCSCQGCFNK PIHEDVVLAT  480
RKQIESRNAL AFAPKVIRTT DSAQEVGVDS TQTPASARHK RGCNCKKSNC LKKYCECYQG  540
GVGCSINCRC EGCKNAFGRR DGSTLLSTEV EMEKLQASER SIAIMHKTSE IPSFHNDDDQ  600
SSEFSIPVTP SKLHRPLIPQ TTSSKGKPPR SSLGTMGSSS GLPRPTFLRS HSSTEKHCQS  660
ASVDEIPAIL QNSSPPSSAL KSLSPNSKRV SSPRNVNGHR SSRKLILQSI PSFPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1543555512120Protein lin-54 homolog
5fd3_B1e-1543555512120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419423KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694035.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A0K9R5V10.0A0A0K9R5V1_SPIOL; Uncharacterized protein
STRINGXP_010694035.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-108Tesmin/TSO1-like CXC domain-containing protein