PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_007941-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | CPP | ||||||||
Protein Properties | Length: 717aa MW: 78097 Da PI: 6.652 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.3 | 9.9e-16 | 434 | 471 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnC kskClk+YCeCfaag++C e C+C++C+Nk AHYPO_007941-RA 434 CKRCNCVKSKCLKLYCECFAAGVYCIEPCSCQGCFNKP 471 89**********************************96 PP | |||||||
2 | TCR | 51 | 2.9e-16 | 518 | 556 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN AHYPO_007941-RA 518 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 556 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.4E-17 | 432 | 473 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.044 | 433 | 558 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.1E-11 | 435 | 470 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-17 | 518 | 559 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 520 | 556 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MDTPQKTQIE TPLSAPEDAP FDSPFFNFAS NLSPINPITT IHVSQTIASC SFSSPPSVFT 60 SPHVNIPKGC QLFRPRVLDL AKRTFVVNEG DKDSAAADIT RNDHQIDSLV NVQLRGEGAS 120 GSENSCKAIE DSSECATEPP KEPSGRDSFE TELKSQVVNN ENEETSCDWQ SLIDNNSDLF 180 VFNSPNDVAS SNGPLRKSQH EEANVSASLL ARFPTDQAYG QSSLHVDSCS YNDSLENIEH 240 STQPTGAAEP RQIDETTKNM EISSVNEFLS GDSRENPKIE SLNNLQKGMR RRCLTFEMPR 300 SKKNADSVLS SGSLSALQRE EKPLSNNSQP ITPRVDSSRR IFPSIGLHLN ALAAASKDCG 360 ISNQEMVSPT MQDLLMNSSD LLSLTKEEGP DENRIENAEN SSEASVYLTN EDLYSNSPKK 420 KRKKSETTGE GAACKRCNCV KSKCLKLYCE CFAAGVYCIE PCSCQGCFNK PIHEDVVLAT 480 RKQIESRNAL AFAPKVIRTT DSAQEVGVDS TQTPASARHK RGCNCKKSNC LKKYCECYQG 540 GVGCSINCRC EGCKNAFGRR DGSTLLSTEV EMEKLQASER SIAIMHKTSE IPSFHNDDDQ 600 SSEFSIPVTP SKLHRPLIPQ TTSSKGKPPR SSLGTMGSSS GLPRPTFLRS HSSTEKHCQS 660 ASVDEIPAIL QNSSPPSSAL KSLSPNSKRV SSPRNVNGHR SSRKLILQSI PSFPSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-15 | 435 | 555 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-15 | 435 | 555 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 419 | 423 | KKRKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694035.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0K9R5V1 | 0.0 | A0A0K9R5V1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694035.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-108 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_007941-RA |