PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007790-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 1175aa    MW: 132017 Da    PI: 7.9561
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007790-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox406.6e-132877857
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     t+ ql++Le+l+  +++p++++ e+ A+ lgLt +qVk WF  rR ++k+
  AHYPO_007790-RA 28 TPLQLNTLENLYSDDKNPTESRLEDYAMALGLTYEQVKRWFVDRRRRDKR 77
                     899*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.6E-91682IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-112677IPR009057Homeodomain-like
SuperFamilySSF466897.7E-122678IPR009057Homeodomain-like
CDDcd000863.46E-82668No hitNo description
PfamPF000464.6E-102877IPR001356Homeobox domain
PROSITE profilePS5007113.2322878IPR001356Homeobox domain
PROSITE profilePS5082711.289393452IPR018501DDT domain
SMARTSM005714.3E-7393452IPR018501DDT domain
PfamPF027912.4E-8399449IPR018501DDT domain
PfamPF156128.6E-8669708IPR028942WHIM1 domain
PfamPF156131.1E-11802875IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1175 aa     Download sequence    Send to blast
MASHPQRPLY LSPTTTTSFD CCDLLRKTPL QLNTLENLYS DDKNPTESRL EDYAMALGLT  60
YEQVKRWFVD RRRRDKRVAD KTTRVNGSAR KTTKGRKSKL TKDLSSFEKG EHENCIRTPV  120
PVQDMLYSSN YIFKKIFRKD GPPLGVEFDV LPNTSCCGRI DITDNRYRLV ASQEEERGSK  180
RRKVTKTIIL DSEQQIQMKT PLKKHGKGKG LMSVWQLVNS RASFQDNVGA FQREKILPGK  240
SKDPAKCHGK GKGFMNASQL SKSNSKRNRQ RKKPTTLRKS GKKMPEKRKP LSRQRKVETR  300
RNENQKARRS CCKIALNLES CDDNLCLFPM LVDDEELELR ELQAGSNPLT CGGHFAAAGN  360
YGCSLCKGLL PKFPPDSVRM RKPLDIHPWN SSWDLEKKIF KVFQFLYTYA VVLDLCPFTL  420
DELAMAFHDK DSSLLGKLHV CLLGFLLSDI QKEMSNGHSI HSNKNGRFLN LLHKAETQTF  480
IVDFWKKSLN PLTWTEILRQ VLIAAGFGLK DGNQSKKGLT KEADHMTKYG LRPGSLKGEI  540
FGILCENGNK GITVAELSKA SQIVDLNLGK TSGELEDSIC SILAGDITLF EKISSSAYRL  600
RLTSITKKYD DALSDDEDCS SIYDDSRVSS IHSTIVDCDS GNSSSKPDKE NQSPVNSLNL  660
SSVIDESHPG ESWLLGLMEG EYSDLSVEEK LKALLALIDL VSAVSSIRME DPLAALGESV  720
PSIYQQGFGG KIKPSTVRQH GMFSSFCSDR ETRGVENRFR STENCPIDSS VVLSKMCEQD  780
KYSGEKTNSN GAGHGDYLHP VQSIFLGSDR RHNRYWLFLG PCDANDPGHK RVYFESSEDG  840
QWQVIDNEEA LCGLMASLNN DGRREANLLA SLEKRMEFLL EEMSSCIPVD VTVSQSTQSG  900
LSEIDRINED SPSPRSEIDS LSLSETSCNA LASSCVAPFK VGKKEDQKQK YERLQAYDSW  960
IWNGFYVNLH AVRHRKRSFF DSWIRCGSCH DLYWRDERHC KICHTTFELD LDLEEKYTIH  1020
VATCQGCEDA DVYSMHKVLP SKLQALKAAI HMIELIMPED ALIGVWKRSA HKLWVQRLKR  1080
TSSLHELLHV LADFVNSLKL DWVSQCKVTL KNESPIDDFI EHFQSMPQTS SAVALWLVNL  1140
DALIASQLDE GIVVGGAKGP NSSAAAFPVP ISVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974DRRRRD
27075RRRRDK
3265270KRNRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694636.10.0PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
TrEMBLA0A0K9RYZ90.0A0A0K9RYZ9_SPIOL; Uncharacterized protein
STRINGXP_010694636.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator