PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_007790-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 1175aa MW: 132017 Da PI: 7.9561 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40 | 6.6e-13 | 28 | 77 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le+l+ +++p++++ e+ A+ lgLt +qVk WF rR ++k+ AHYPO_007790-RA 28 TPLQLNTLENLYSDDKNPTESRLEDYAMALGLTYEQVKRWFVDRRRRDKR 77 899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.6E-9 | 16 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 26 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-12 | 26 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.46E-8 | 26 | 68 | No hit | No description |
Pfam | PF00046 | 4.6E-10 | 28 | 77 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.232 | 28 | 78 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 11.289 | 393 | 452 | IPR018501 | DDT domain |
SMART | SM00571 | 4.3E-7 | 393 | 452 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.4E-8 | 399 | 449 | IPR018501 | DDT domain |
Pfam | PF15612 | 8.6E-8 | 669 | 708 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.1E-11 | 802 | 875 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1175 aa Download sequence Send to blast |
MASHPQRPLY LSPTTTTSFD CCDLLRKTPL QLNTLENLYS DDKNPTESRL EDYAMALGLT 60 YEQVKRWFVD RRRRDKRVAD KTTRVNGSAR KTTKGRKSKL TKDLSSFEKG EHENCIRTPV 120 PVQDMLYSSN YIFKKIFRKD GPPLGVEFDV LPNTSCCGRI DITDNRYRLV ASQEEERGSK 180 RRKVTKTIIL DSEQQIQMKT PLKKHGKGKG LMSVWQLVNS RASFQDNVGA FQREKILPGK 240 SKDPAKCHGK GKGFMNASQL SKSNSKRNRQ RKKPTTLRKS GKKMPEKRKP LSRQRKVETR 300 RNENQKARRS CCKIALNLES CDDNLCLFPM LVDDEELELR ELQAGSNPLT CGGHFAAAGN 360 YGCSLCKGLL PKFPPDSVRM RKPLDIHPWN SSWDLEKKIF KVFQFLYTYA VVLDLCPFTL 420 DELAMAFHDK DSSLLGKLHV CLLGFLLSDI QKEMSNGHSI HSNKNGRFLN LLHKAETQTF 480 IVDFWKKSLN PLTWTEILRQ VLIAAGFGLK DGNQSKKGLT KEADHMTKYG LRPGSLKGEI 540 FGILCENGNK GITVAELSKA SQIVDLNLGK TSGELEDSIC SILAGDITLF EKISSSAYRL 600 RLTSITKKYD DALSDDEDCS SIYDDSRVSS IHSTIVDCDS GNSSSKPDKE NQSPVNSLNL 660 SSVIDESHPG ESWLLGLMEG EYSDLSVEEK LKALLALIDL VSAVSSIRME DPLAALGESV 720 PSIYQQGFGG KIKPSTVRQH GMFSSFCSDR ETRGVENRFR STENCPIDSS VVLSKMCEQD 780 KYSGEKTNSN GAGHGDYLHP VQSIFLGSDR RHNRYWLFLG PCDANDPGHK RVYFESSEDG 840 QWQVIDNEEA LCGLMASLNN DGRREANLLA SLEKRMEFLL EEMSSCIPVD VTVSQSTQSG 900 LSEIDRINED SPSPRSEIDS LSLSETSCNA LASSCVAPFK VGKKEDQKQK YERLQAYDSW 960 IWNGFYVNLH AVRHRKRSFF DSWIRCGSCH DLYWRDERHC KICHTTFELD LDLEEKYTIH 1020 VATCQGCEDA DVYSMHKVLP SKLQALKAAI HMIELIMPED ALIGVWKRSA HKLWVQRLKR 1080 TSSLHELLHV LADFVNSLKL DWVSQCKVTL KNESPIDDFI EHFQSMPQTS SAVALWLVNL 1140 DALIASQLDE GIVVGGAKGP NSSAAAFPVP ISVD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 74 | DRRRRD |
2 | 70 | 75 | RRRRDK |
3 | 265 | 270 | KRNRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694636.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A0K9RYZ9 | 0.0 | A0A0K9RYZ9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694636.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_007790-RA |