PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007754-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YA
Protein Properties Length: 274aa    MW: 30410.7 Da    PI: 7.31
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007754-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA36.61.5e-111381593758
        CBFB_NFYA  37 pylheSRhkhAlrRpRgsgGrF 58 
                      py+heSRh+hA+rR+Rg gGrF
  AHYPO_007754-RA 138 PYIHESRHRHACRRARGAGGRF 159
                      8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005210.009693162IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.4E-10138159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115213.891138162IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQKMGSMPWW VNSGSQDEPI NSSNLTQIDW VGEHQKSDGI GSPEKDKQGV FHLSFSAGEN  60
KNSLKENDAL DLQTNNFPQF LSPHQKNYIE LGLGQPMVYA NYSHVDQCHG FFAVHGAQPT  120
GRVMLPFTLT TEDGPIYPYI HESRHRHACR RARGAGGRFL NTKNFENNKV KPETKKTSAN  180
QLTFLSSQSS SSEVLQSEGR HLNCSKEVSD CKSSNFSSSE VTSMYYSKEF DCFGLNPSRP  240
FAFHALPNLE ESRQGGNGNW VAAANSCCNL FKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143152RHRHACRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758270.11e-125nuclear transcription factor Y subunit A-10-like
RefseqXP_021758271.11e-125nuclear transcription factor Y subunit A-10-like
RefseqXP_021758273.11e-125nuclear transcription factor Y subunit A-10-like
RefseqXP_021758274.11e-125nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0K9RCB11e-123A0A0K9RCB1_SPIOL; Uncharacterized protein
STRINGXP_010695104.11e-114(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-11nuclear factor Y, subunit A10