PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_006852-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 51aa MW: 5585.5 Da PI: 9.9466 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 88.3 | 8e-28 | 1 | 49 | 17 | 65 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingd 65 mkk+lPanakiskdaketvqec+s+fisf+t+easdkcqrekrkting+ AHYPO_006852-RA 1 MKKALPANAKISKDAKETVQECISKFISFITGEASDKCQREKRKTINGE 49 9**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 7.7E-18 | 1 | 49 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.6E-24 | 1 | 49 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.34E-17 | 1 | 49 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 6.0E-9 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 6.0E-9 | 38 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
MKKALPANAK ISKDAKETVQ ECISKFISFI TGEASDKCQR EKRKTINGEI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-21 | 1 | 49 | 17 | 65 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-21 | 1 | 49 | 17 | 65 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021294217.1 | 1e-26 | nuclear transcription factor Y subunit B-2 isoform X1 | ||||
Swissprot | O23310 | 3e-27 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q75IZ7 | 1e-26 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A1S3YX01 | 5e-25 | A0A1S3YX01_TOBAC; nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2U1QH69 | 5e-25 | A0A2U1QH69_ARTAN; NF-Y protein | ||||
STRING | ORUFI03G21970.1 | 1e-25 | (Oryza rufipogon) | ||||
STRING | Traes_2AS_B3BC47BB0.1 | 3e-26 | (Triticum aestivum) | ||||
STRING | Traes_3DS_833AD0EE2.1 | 5e-26 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-29 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_006852-RA |
Publications ? help Back to Top | |||
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