PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_006758-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25523.2 Da PI: 6.7231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.2 | 6.7e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll +lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+ AHYPO_006758-RA 7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLGHLPVSDRSEAALTISYEAQARLHDPIYGCVSHIFALQQQVVNLQAQ 100 7*************************89****************************************************************** PP DUF260 94 lallke 99 la+lk+ AHYPO_006758-RA 101 LAALKQ 106 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.969 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLGHLPVSD 60 RSEAALTISY EAQARLHDPI YGCVSHIFAL QQQVVNLQAQ LAALKQIQAA QGIYNGNSTQ 120 NPNNERSCSN YPQDVQSWLQ SEYPNMVPPY NPNNFNCSSE SSTIYGSNQS HNNGFSSMVG 180 LQDDQDVSFP GFEGSSHHSA SMAVSLDFSS KLKWPYQDSD DLHSMAFGYP QHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-36 | 3 | 122 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-36 | 3 | 122 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021770209.1 | 1e-130 | LOB domain-containing protein 29-like | ||||
TrEMBL | A0A1R3I7B6 | 2e-94 | A0A1R3I7B6_COCAP; Uncharacterized protein | ||||
STRING | XP_010679217.1 | 1e-125 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 4e-54 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_006758-RA |