PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006558-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 373aa    MW: 42055.4 Da    PI: 6.5069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006558-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1853104156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GVr+++ +gr++AeIrdp     +   r +lg+++taeeAa a++ a+++++g+
  AHYPO_006558-RA  53 SRYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTYDTAEEAACAYDCAARAMRGN 104
                      79********.**********6.....335999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-2253113IPR016177DNA-binding domain
CDDcd000183.88E-3053113No hitNo description
PfamPF008474.0E-1153103IPR001471AP2/ERF domain
SMARTSM003801.0E-3354117IPR001471AP2/ERF domain
PROSITE profilePS5103222.37954111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3054111IPR001471AP2/ERF domain
PRINTSPR003674.5E-95566IPR001471AP2/ERF domain
PRINTSPR003674.5E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEQQQQIIKP HYFPQTFTQF SIEDLHPSLD KQSENTPKKT PSKPTKPATV NSSRYRGVRR  60
RPWGRYAAEI RDPHSKERRW LGTYDTAEEA ACAYDCAARA MRGNKARLNF SYSSLPLDYD  120
HHNIMYPPPL PPFNNTSTSK KKSQSSIKPK SNLTPQNSNF MEWLTSSSSN QNSHLTMMNG  180
SDGGVMMGFT ESPVPASQRN MVNTFSDLFP SSLAFTNNNN PLPDDYHHYH HQNSDCSNIT  240
MIDHHSDIIP SEQSANSGLL DEIIEKYFPK TNPTKSYSEH SSLTFDHHHH EDDSNVGVYF  300
DGSASETVSF NGDMMTGFGE TVGRNYPVYE LPQYQYNGPS MMFDDHGVGG IFQYNELYSM  360
LATPRGANCL GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1955110359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853209.17e-99ethylene-responsive transcription factor ESR1-like
TrEMBLA0A0K9QZ012e-97A0A0K9QZ01_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-12DORNROSCHEN-like