PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006152-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 351aa    MW: 36911.5 Da    PI: 6.8966
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006152-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-30128181155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  AHYPO_006152-RA 128 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 181
                      59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.67E-20125185IPR009057Homeodomain-like
PROSITE profilePS5129411.059125184IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-30127186IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-24129181IPR006447Myb domain, plants
PfamPF002491.4E-7131180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MREEDSNWFS KWEEELPTPD ELISISQSLI TPDLASAFDI QNNGSNNGNN TPTSLLHLHS  60
SSSPQLFSHY YNQNQQQQSS SAPLGPPPQP NSSEFDSSSA ELGGGCGGGA SSGGGGGGAD  120
EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR  180
LYLKRMQSLN NGGGPGNGGG PGNGSVAGLG GSGDPVTDHL FASSPVPAHL LHQGGPGGGG  240
GGRASSDHFM PYMPVTALNH HHMAAAVAGH PQIQAQFQHH RQMGHFGSPQ SGGHGHGHGQ  300
FEHPFLSRQA QLGPNRNGMM QNNSGYVEDL ESATANNGRK VLTLFPTGDD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-33128184157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864004.11e-157transcription factor MYBC1-like
SwissprotO222101e-55MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0K9QBX61e-156A0A0K9QBX6_SPIOL; Uncharacterized protein
STRINGXP_010673075.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-59G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]