PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_006083-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 27657.2 Da PI: 5.8677 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.5 | 6.4e-56 | 44 | 148 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdf AHYPO_006083-RA 44 QLQMFWSYQrqeIENANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDF 137 89*****998899********************************************************************************* PP NF-YC 92 lvdivprdelk 102 lvdivprde+k AHYPO_006083-RA 138 LVDIVPRDEIK 148 ********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.52E-34 | 13 | 138 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.9E-37 | 58 | 130 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-20 | 66 | 129 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEGNQQPPPP QPSQPPLPQS TTGYPSPTPH AAQYHHLLQQ QQQQLQMFWS YQRQEIENAN 60 DFKNHQLPLA RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL 120 QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE AAGLGMMPPT GIVPPTGIVG PPSGVGPTAS 180 GVPYYYPPMG QPAPGVMIGR PAIDPTGAAG MYATPPSTAW QNVWQGGHAP GDDGSYGSVP 240 NAGGNSAQGN LDAHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-55 | 52 | 144 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021737460.1 | 1e-117 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 9e-99 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | R0FL35 | 1e-107 | R0FL35_9BRAS; Uncharacterized protein | ||||
STRING | XP_010695369.1 | 1e-107 | (Beta vulgaris) | ||||
STRING | XP_006290279.1 | 1e-107 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 3e-96 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_006083-RA |
Publications ? help Back to Top | |||
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