PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006052-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 316aa    MW: 35368.4 Da    PI: 5.2265
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006052-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.21.9e-2218115186
         trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                      rWt+qe+l+Li+a++ +e++ ++g+             ++p+W  +s +++++g +r+p qC+++w+nl +++kkik +e+k t++++s +++ 
  AHYPO_006052-RA  18 RWTRQETLTLIQAKEITENSPNKGRkisstltgssseNAEPKWVMISTYCKHQGANRGPAQCRKRWSNLIGDFKKIKVWESKLTDRVESFWAMR 111
                      8******************99998556666777777699*************************************************999999 PP

         trihelix  83 dqle 86 
                      ++l+
  AHYPO_006052-RA 112 NDLR 115
                      9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2591187IPR017877Myb-like domain
PfamPF138371.6E-1017111No hitNo description
Gene3DG3DSA:1.10.10.608.1E-51887IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAIESSSNGD EKSRRHPRWT RQETLTLIQA KEITENSPNK GRKISSTLTG SSSENAEPKW  60
VMISTYCKHQ GANRGPAQCR KRWSNLIGDF KKIKVWESKL TDRVESFWAM RNDLRKEKKL  120
PVSFDVEVFK VLEGREMGSN GAVSPLPLQA VPAVSEDVNE FMIDGDDDED DDPEEEEEDI  180
QGLVGAENKK SMEIENGHVV ENGKQNGDED SINGGIHSPA IKKCTSQPVS GTEKQQLQAC  240
QEQKRNSNLD PSNCDSQDKG KRVRLCFEEH NPNCFESQIL RALESNNKLK KEHNDVLIAA  300
LAKLTDVFTK LADKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102702.11e-103PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A0K9QY442e-87A0A0K9QY44_SPIOL; Uncharacterized protein
STRINGXP_010696439.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-50Trihelix family protein