PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006046-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LFY
Protein Properties Length: 378aa    MW: 41650.6 Da    PI: 5.8327
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006046-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY323.84.1e-9911537548280
          FLO_LFY  48 lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrk......ll.. 133
                        +le+lf+ayG+ry+t+akiae+GftvstLvdmk+ee++++m+sls++fr+dllvGeryGikaa+rae+rrlee e+++++r+      l+  
  AHYPO_006046-RA 115 SACLEDLFQAYGIRYYTAAKIAEMGFTVSTLVDMKEEEVEEMMNSLSHLFRWDLLVGERYGIKAAIRAEKRRLEELEESRRHRHhhhnhqLMsy 208
                      458************************************************************************8877777765566652256 PP

          FLO_LFY 134 .....sedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkse.................e 205
                            e ++   dalsqeg+see v+e ke  g gg+   ++e+vaa+ +++++ + +++ +++k++k++e++ +                 e
  AHYPO_006046-RA 209 sntppPESNHLPHDALSQEGISEEGVHE-KEVIGGGGS---NWEMVAAHPNNTNNYNCNEDPQRKKHRKQHERSRKtihnlmtittnrklnnmE 298
                      5555333444499***********9855.454444444...466666665544444444433333333333322224566789999****9964 PP

          FLO_LFY 206 dedeeeeededeegsgedge..erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280
                      d+ eee +d+deeg+g  g   erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtk
  AHYPO_006046-RA 299 DDMEEEVDDDDEEGGGGAGGatERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTK 375
                      4434444444444433333235******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.8E-92116375IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDQDPFTASL FKWEYPRGSL AIAPSSTGPL QLQQSNGQAV QSPTLPTYLA RGMGNRMGMG  60
MGMGMGMGMG MGMNMGMGMQ GIAMGIPGGG AITNNNTPAV AGTGTGTGLG GNSGSACLED  120
LFQAYGIRYY TAAKIAEMGF TVSTLVDMKE EEVEEMMNSL SHLFRWDLLV GERYGIKAAI  180
RAEKRRLEEL EESRRHRHHH HNHQLMSYSN TPPPESNHLP HDALSQEGIS EEGVHEKEVI  240
GGGGSNWEMV AAHPNNTNNY NCNEDPQRKK HRKQHERSRK TIHNLMTITT NRKLNNMEDD  300
MEEEVDDDDE EGGGGAGGAT ERQREHPFIV TEPGEVARGK KNGLDYLFHL YEQCRDFLIQ  360
VQNIAKERGE KCPTKDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A2e-30320375358PROTEIN LEAFY
2vy2_A2e-30320375358PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021771140.11e-141LOW QUALITY PROTEIN: floricaula/leafy homolog
SwissprotO040642e-84FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A0J8B3F41e-120A0A0J8B3F4_BETVU; Uncharacterized protein
TrEMBLA0A0K9RRX91e-120A0A0K9RRX9_SPIOL; Uncharacterized protein
STRINGXP_010667025.11e-121(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-57floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]