PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005917-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 287aa MW: 32298.6 Da PI: 7.7057

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005917-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87	3.4e-27	9	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 lppG+rF P++e+l+++yL k ++ + ++ evike+++y+++P dLp+ +k+++++wy F++r + g +++r + AHYPO_005917-RA 9 LPPGCRFYPSEEQLLDYYLPCKNNNPElglsssskPSFYEVIKEINLYDFNPFDLPEvncfrfGFKGRKRHWYCFTERVN----GGESRRRAGF 98 79******************9999977666655445559**********9557887666667789999988754....6677777899 PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g+Wk +gk ++v+ + ++ g +k++ fy k + ++ ++tdWvm ey+l AHYPO_005917-RA 99 GFWKMKGKVRDVMGNgGKVILGRRKSFNFYleKFNGKSDVRTDWVMYEYAL 149 **********9444558*****7545778888*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-33	6	165	IPR003441	NAC domain
PROSITE profile	PS51005	36.989	9	165	IPR003441	NAC domain
Pfam	PF02365	8.4E-18	10	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEDPNTTSLP PGCRFYPSEE QLLDYYLPCK NNNPELGLSS SSKPSFYEVI KEINLYDFNP 60 FDLPEVNCFR FGFKGRKRHW YCFTERVNGG ESRRRAGFGF WKMKGKVRDV MGNGGKVILG 120 RRKSFNFYLE KFNGKSDVRT DWVMYEYALI DNLKASFVVC RVFAKPRGRN SISEHAFSSC 180 AEESIATVRH IGIQHDGITI SALDEGKTLN CDYINGKIAG QPSKPIEDTA PNNLFPRPHI 240 SAPECHASMV KSEGRAGSSD LMANSFTTQH LACILEGDYI QLDDLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-19	3	165	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-19	3	165	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-19	3	165	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-19	3	165	10	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-19	3	165	13	168	NAC domain-containing protein 19
3swm_B	1e-19	3	165	13	168	NAC domain-containing protein 19
3swm_C	1e-19	3	165	13	168	NAC domain-containing protein 19
3swm_D	1e-19	3	165	13	168	NAC domain-containing protein 19
3swp_A	1e-19	3	165	13	168	NAC domain-containing protein 19
3swp_B	1e-19	3	165	13	168	NAC domain-containing protein 19
3swp_C	1e-19	3	165	13	168	NAC domain-containing protein 19
3swp_D	1e-19	3	165	13	168	NAC domain-containing protein 19
4dul_A	1e-19	3	165	10	165	NAC domain-containing protein 19
4dul_B	1e-19	3	165	10	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688772.1	1e-125	PREDICTED: NAC transcription factor 29-like isoform X1
TrEMBL	A0A0K9R5M3	1e-122	A0A0K9R5M3_SPIOL; Uncharacterized protein
STRING	XP_010688772.1	1e-124	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-24	NAC family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005917-RA