PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005775-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 524aa MW: 58435.6 Da PI: 5.2734

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005775-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6.1e-10	204	262	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L+ +l l+ l++e+ AHYPO_005775-RA 204 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLAAQLTLLQRDTNGLTAEN 262 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-15	200	264	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	202	265	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.5E-8	202	258	No hit	No description
SuperFamily	SSF57959	1.75E-10	204	255	No hit	No description
Pfam	PF00170	3.8E-7	204	258	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.40E-23	205	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MFSRVYNYNS SLFTQIINLG FRIMDKEKLH GGIGLPPTAT GRFSPFSPPT SSSSPSLQQQ 60 PTQTSSFSHD LSRMPDNPPK NMGHRRAHSE ILTLPDDISF DSDLGVVGGG LDGPSFSDET 120 EEDLFSMYID MDKVNSATSA GIQVGETSSG LGSKPRHQYS QSMDGSTTIK TEMLVSGSEE 180 ATPVEAKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE 240 ATSLAAQLTL LQRDTNGLTA ENSELKLRLQ TMEQQVHLQD ALNEALKDEI QHLKMLTGQA 300 MSNGGPMMNF PASYANSQPF YPNSQAMHTM LTAQQFQQLQ INSQKQQYQQ HQLHQLQQQQ 360 LQQPELTKQS QLSGDFKTRP PMPLLKENTS DLNSRVCVKW VPKVPKEFAK GKEIDADGFK 420 PIEQKVGDMI LLPKALVITN DCAALDKYRR NDSDVQDITD YAIQEEVDDE AEDIERLAEL 480 RVAPHHSDVQ DITDHAIQEE VDDEAEDIKR LAELRVAPHP FKG*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MFSRVYNYNS SLFTQIINLG FRIMDKEKLH GGIGLPPTAT GRFSPFSPPT SSSSPSLQQQ  60
PTQTSSFSHD LSRMPDNPPK NMGHRRAHSE ILTLPDDISF DSDLGVVGGG LDGPSFSDET  120
EEDLFSMYID MDKVNSATSA GIQVGETSSG LGSKPRHQYS QSMDGSTTIK TEMLVSGSEE  180
ATPVEAKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE  240
ATSLAAQLTL LQRDTNGLTA ENSELKLRLQ TMEQQVHLQD ALNEALKDEI QHLKMLTGQA  300
MSNGGPMMNF PASYANSQPF YPNSQAMHTM LTAQQFQQLQ INSQKQQYQQ HQLHQLQQQQ  360
LQQPELTKQS QLSGDFKTRP PMPLLKENTS DLNSRVCVKW VPKVPKEFAK GKEIDADGFK  420
PIEQKVGDMI LLPKALVITN DCAALDKYRR NDSDVQDITD YAIQEEVDDE AEDIERLAEL  480
RVAPHHSDVQ DITDHAIQEE VDDEAEDIKR LAELRVAPHP FKG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672248.1	1e-180	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-135	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0K9RRS7	1e-170	A0A0K9RRS7_SPIOL; Uncharacterized protein
STRING	XP_010672248.1	1e-180	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-113	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005775-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]