PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005711-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 974aa    MW: 109844 Da    PI: 4.9831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005711-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  AHYPO_005711-RA  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding30.96.1e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT +Ede+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  AHYPO_005711-RA  60 TEWTRDEDERLLHVAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139212.0E-121070No hitNo description
CDDcd001675.82E-121053No hitNo description
SuperFamilySSF466898.79E-2033109IPR009057Homeodomain-like
CDDcd116595.68E-2955106No hitNo description
Gene3DG3DSA:1.10.10.606.6E-1357104IPR009057Homeodomain-like
SMARTSM007174.9E-1158105IPR001005SANT/Myb domain
PROSITE profilePS5129415.63358107IPR017930Myb domain
PfamPF118313.8E-59407649IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTRDEDERL LHVAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRKGIDYN AEIPFEKRPP PGFYDVVDED RPVEQPQFPT  240
TIGELEGERR ADIEARLRKQ DIAKNKIAQR QDAPAAIMQA NKLNDPETVR KRSKLMLPPP  300
QISDQELEEI ARMGYASDLL AGNQELSDGS GATDALIGNN YQTPRPGMTP MRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGHNPEL HPSDFSGVTP KKRDIQTPNP MLTPLATPGG  420
AGLTPKIGMT PSRDGSFSMT PRGTPLRDEL HINEELDTHD SAKLELRRQA DLKRNLRMGL  480
SSLPEPKNEY DVVVRPAPDD TEESEEKIEE DMSDRLARER AEEEARLQAL LKKRSKVLQR  540
ELPRPPAASV DLIRHSLMRA DEDKSSFVPP TDIEQADEMV RKELLSLLEH DNAKYPLTEK  600
EKKKGSKRGA NEVPVIEDYE EDELKNAASF IEEEAQYLRV AMGHQDVTID DFIEAHKTSL  660
NDLMYFPSRN AYGLSSVAGT VEKLAALQNE FENVKRKMDD DSKKAQRLEK KIDVLTHGYK  720
MRAEKLKTQT ELTFKQMNTS GTELDCFLAL QRQEKLAASF RIKGLWEEVQ KQKELEKTLQ  780
KRYGDLVTEL ERVQQLINQH RIQAQKLEEM EAKKLAEELA EKEANEAAPP SSEILDPASA  840
MEVDVSDNLK PHQHGDGTEM VNGANSENDM NIDGDATLAA NTLPDSEIVR DQHVDGTKVS  900
DSVSENKENV GEAIESNGFV EGESVSTSKM ENQGVDREPD SEINTEEVNQ PTIEGNTEDS  960
LDKTDNGGSD FQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027943799Cell division cycle 5-like protein
5xjc_L0.027943799Cell division cycle 5-like protein
5yzg_L0.027943799Cell division cycle 5-like protein
5z56_L0.027943799Cell division cycle 5-like protein
5z57_L0.027943799Cell division cycle 5-like protein
5z58_L0.027943799Cell division cycle 5-like protein
6ff4_L0.027943799Cell division cycle 5-like protein
6ff7_L0.027943799Cell division cycle 5-like protein
6icz_L0.027943799Cell division cycle 5-like protein
6id0_L0.027943799Cell division cycle 5-like protein
6id1_L0.027943799Cell division cycle 5-like protein
6qdv_O0.027943799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDVRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674469.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0K9RDE10.0A0A0K9RDE1_SPIOL; Uncharacterized protein
STRINGXP_010674469.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]