PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005576-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family RAV
Protein Properties Length: 408aa    MW: 44847.5 Da    PI: 9.5076
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005576-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-1379127155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  AHYPO_005576-RA  79 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 127
                      89****9888.8*********3.....5**********99*************98 PP
2B394.67e-30211322193
                      EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                      f+kv tpsdv+k++rlv+pk++ae+h                   ++++ +++ l +ed + ++W+++++y+++s++yvltkGW++Fvk++ Lk
  AHYPO_005576-RA 211 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqannnnngngilfstsSNNSSKGVLLNFEDVNEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLK 304
                      99****************************9999999999888886666799****************************************** PP

                      TT-EEEEEE-SSSEE..E CS
               B3  76 egDfvvFkldgrsefelv 93 
                      +gD+v F+++   +++l+
  AHYPO_005576-RA 305 AGDVVSFQRSTGPDKQLY 322
                      ********7755666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-979127IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1779135IPR016177DNA-binding domain
CDDcd000184.58E-2779134No hitNo description
Gene3DG3DSA:3.30.730.108.6E-2180135IPR001471AP2/ERF domain
PROSITE profilePS5103220.45580135IPR001471AP2/ERF domain
SMARTSM003802.6E-3080141IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-38207328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-29209319IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-26210314No hitNo description
PfamPF023623.2E-27211322IPR003340B3 DNA binding domain
SMARTSM010193.0E-24211327IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169211329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDSSSPSSMD ECSSTSDSLT STTPPLPPTL IRTLIPTAPF KASAAAAKPG SLCRMGSGTS  60
VIIDSENGVE AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAARAYDV  120
AAQRFRGRDA VTNFKPLSAE DEAGSAELRF LNSRSKAEVV DMLRKHTYLD ELQQSKRNYK  180
ADFDKTGSTH LISDKSKPEN TINGFGKEQL FEKVVTPSDV GKLNRLVIPK QHAEKHFPLQ  240
ANNNNNGNGI LFSTSSNNSS KGVLLNFEDV NEKVWRFRYS YWNSSQSYVL TKGWSRFVKE  300
KSLKAGDVVS FQRSTGPDKQ LYIDYKQRNC DGLLGRVMEG PVNVGSTGQM LRLFGVDICK  360
VHHPIVVNVV ADGNGNGNGC GNGKRLREVE LLAMESNSKK QMVVAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5520833311122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845494.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-138RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0K9QUD70.0A0A0K9QUD7_SPIOL; Uncharacterized protein
STRINGXP_010681667.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-137related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]