PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005572-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 357aa    MW: 39653.9 Da    PI: 7.1868
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005572-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.37.5e-33214269156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  AHYPO_005572-RA 214 KSRRCWSPELHRRFVHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 269
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.366211271IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-29212272IPR009057Homeodomain-like
SuperFamilySSF466895.08E-18212272IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-27214269IPR006447Myb domain, plants
PfamPF002491.2E-7216267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMDFRDNLEK CQQYVNALEE ERKKIQVFQR ELPLCVELVS QAIEACKQQL CEATTVTTPT  60
TECMNGHSEC SEQTTSDGPI LEEFIPIKRS NSTYDDEDEH ESDKLLNNNL DDINEKSGKK  120
SDWLRSVQLW NQTPDPTTPK QGEQPKKVAV IEVKRNGNGG AFHPFEKEKN INNGNRNEND  180
KQTNVSTCSN AQNIDITPGN SNGASKKEKE GQRKSRRCWS PELHRRFVHA LQQLGGSHVA  240
TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSSGIPNN TITNPQAPQF VVVGGIWVPP  300
TGDNAAPSGI YAPIATMGTP PTMHQTSAHS QQQTHSRSNS PATSSSTHTS SASHTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14214267255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695844.11e-166PREDICTED: myb family transcription factor EFM
SwissprotQ9FPE81e-104HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A0J8B7X91e-165A0A0J8B7X9_BETVU; Uncharacterized protein
STRINGXP_010695844.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-104G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]