PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005557-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 569aa    MW: 63126.4 Da    PI: 7.909
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005557-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.8e-1267109251
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 
                      +y+GVr ++ +g+++AeIr+p         r++lg+f ta+eA   ++ + +
  AHYPO_005557-RA  67 KYPGVRLRP-WGKYAAEIRHP-----IdkVRIWLGTFNTAKEA---YDVYYL 109
                      8********.**********8.....335**********5555...555544 PP
2AP223.91e-07184220545
              AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 
                      GV + k +g+W A++ +p++n    +++lg+f+taeeA + 
  AHYPO_005557-RA 184 GVMRVK-SGKWGARVSHPKTN---DKIWLGTFDTAEEAIRV 220
                      675455.8******9999764...9*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-1667107IPR001471AP2/ERF domain
PROSITE profilePS5103215.88367126IPR001471AP2/ERF domain
CDDcd000185.39E-1667106No hitNo description
SMARTSM003801.1E-1167127IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1267114IPR016177DNA-binding domain
PfamPF008471.5E-567107IPR001471AP2/ERF domain
PRINTSPR003674.1E-66879IPR001471AP2/ERF domain
PRINTSPR003674.1E-690106IPR001471AP2/ERF domain
PROSITE profilePS5103210.52181219IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-8183224IPR016177DNA-binding domain
CDDcd000188.20E-11184219No hitNo description
Gene3DG3DSA:3.30.730.103.2E-9184219IPR001471AP2/ERF domain
SMARTSM003800.0019184237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MKKFRVFCTD PDATDSSSSD EDEKIKENPL KKKRFLREIT IKNGRKASGK PMVKGSQTER  60
MPKKAVKYPG VRLRPWGKYA AEIRHPIDKV RIWLGTFNTA KEAYDVYYLK KLEFDALRMT  120
RKSNNNNSVE LQTDNLRISE EKTDVKEEII DEKKGVLPIS EGKTVVKEEI IDEKEGVIKE  180
IPAGVMRVKS GKWGARVSHP KTNDKIWLGT FDTAEEAIRV CKQKEGELGD KFKGKERMSD  240
EPCEGDFHGV KGLESRKECS NVRVMGGRTR VWHPKVKTCS SEGTFKTRKL ARISHSKRVE  300
CGCGNIEAPR GFDGQEIVVS LAAPGLIDDG DDAKLMSTNS DLVKDSNSDK TGGAELPECE  360
TGNTNEPLNN GVGYMERDVV TDLSTKIKTT NLGFVKTINN GGSGDVELST GGRMTKSGNF  420
GAWIPRSVSG IEHCLHSYET LEKEASGIRM TQFEQCFKSR KRVRPDDEDD KDTVTPNKTD  480
SEVLYGSPTS MLDVNSEDYA ITWSGLKSEV EHGAVHGLLA LVFEKKRVKS EDSIVQQSKG  540
SDGISEAQLK VVVPLTFDEA VKVGIVNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-18ERF family protein