PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005549-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 742aa    MW: 83753.9 Da    PI: 4.9078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005549-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.77.9e-1063717392374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                      + lL++cA++v++ +l+ a ++L++++e++sp+gd +qR+a+y++++L+arl +++ el       +++e+   se+l+a ++++   P++ +s
  AHYPO_005549-RA 371 RGLLTRCAQCVAQVNLTSAYEVLKQIREHSSPHGDFLQRVAHYLANGLEARLEGKGLELT------HDNEELsPSEVLKANRIYVASVPFMIMS 458
                      679***************************************************444444......33333227899***************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + t N++I   v+ +  +HiiDf+i +GlQWp+++q L++Rp+gpp++RiTg++ p+ g   +e++eetg+ L k++e+ +vpfe+ + +ak++
  AHYPO_005549-RA 459 YYTMNKTIAGLVSDAPSIHIIDFGIYYGLQWPCIIQNLSKRPGGPPRIRITGIDFPQRGfrPSERIEETGRCLGKYCEKYNVPFEYYP-IAKKW 551
                      *********************************************************99*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ed++leeL+++ +E l+Vn+ ++ h+l+desv+ +s+rd++Lklv++++P+++ ++  ++  + + Fl+rf ea+ +ysalfd +e+++ re++
  AHYPO_005549-RA 552 EDVQLEELKIEGNEPLVVNCLYRAHQLFDESVEENSPRDAFLKLVRKINPDLFMHAVVNSTSSVPFFLNRFKEAMFHYSALFDIFESTMLREDN 645
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      er+ +E +l g+++ nv+aceg er+er e +++W+ r ++aGF++v l+ +    a++++++   ++++ +e+ +++v+gWk+r L+++S W+
  AHYPO_005549-RA 646 ERMLLESKLYGPQALNVIACEGIERVERPEGYKQWQVRTQRAGFEQVGLDRDLLRRARAMVKRSFREEFSYDEDGHWVVQGWKGRILYAISGWK 739
                      ***************************************************************99999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.173344719IPR005202Transcription factor GRAS
PfamPF035142.7E-103371739IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MNQYVFNPNP PYQNFLIDHE YVVHHQSYTH NDQFGVYSSQ IQPFDECQTM PYNFSSLPLL  60
DPLDPAEVPD IPDTCFNYIT NLLREEYHSS DDTSNLTLQD YMTAQMSYNK SLDAALILGE  120
NFSCSFSAHN HQYNPPVSDV LCDQSSRHCL DDYLNMFSTN SCNNMIPYPY YASAPSVIPN  180
NYVGSNDLGS NLVGNLPLVE ASDGAGLEPA PVNVIPRGGE ECNHLEESSF GFIMNDDIQV  240
GNVNLYSDAE LLQDLQNPIA CSLANIGDSE DPIAPICGTS GSVNDNSRRR KHDEGKGDNQ  300
EGNEGRNKQT AVGNTEVNEQ IEQYGDVILC PEGRSKPGAL CNNKCKAQNA DDVGKKKGSK  360
KRSKAQVVDL RGLLTRCAQC VAQVNLTSAY EVLKQIREHS SPHGDFLQRV AHYLANGLEA  420
RLEGKGLELT HDNEELSPSE VLKANRIYVA SVPFMIMSYY TMNKTIAGLV SDAPSIHIID  480
FGIYYGLQWP CIIQNLSKRP GGPPRIRITG IDFPQRGFRP SERIEETGRC LGKYCEKYNV  540
PFEYYPIAKK WEDVQLEELK IEGNEPLVVN CLYRAHQLFD ESVEENSPRD AFLKLVRKIN  600
PDLFMHAVVN STSSVPFFLN RFKEAMFHYS ALFDIFESTM LREDNERMLL ESKLYGPQAL  660
NVIACEGIER VERPEGYKQW QVRTQRAGFE QVGLDRDLLR RARAMVKRSF REEFSYDEDG  720
HWVVQGWKGR ILYAISGWKP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-4537674024379Protein SCARECROW
5b3h_D5e-4537674024379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686165.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A0K9QWW80.0A0A0K9QWW8_SPIOL; Uncharacterized protein
STRINGXP_010686165.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.21e-140GRAS family protein