PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005427-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 247aa    MW: 27981.2 Da    PI: 9.6542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005427-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13184229655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR++i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  AHYPO_005427-RA 184 SIAERMRRNKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKNLQ 229
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.339178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-17181241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-12182231No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15183239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDSYIETQFL NHNHDQNQQQ NSGLLRFRSA PSSILNEFIP NSNDSGRIRD EFVESYERKP  60
ERLNSQSGFL SSIQMVGDEQ RNDSSQLPPQ YPKQIHVNTS SSMERSNSME INLSMRQGSC  120
GLNLNRQNSS PAGFFNQLNT QNGYTIMRGL GSFRVGNGAN GESSPHVVPC KVRAKRGFAT  180
HPRSIAERMR RNKISERMRK LQELVPNMDK QTNTADMLDL AVDYIKNLQN QYKVLSDDRA  240
KCKCLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240817.13e-56PREDICTED: transcription factor bHLH130-like
RefseqXP_021801011.12e-56transcription factor bHLH130-like
TrEMBLA0A251N7Z82e-54A0A251N7Z8_PRUPE; Uncharacterized protein
STRINGXP_008240817.11e-55(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-43bHLH family protein