PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005423-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 435aa    MW: 49113.5 Da    PI: 7.7263
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005423-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.5e-344498155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  AHYPO_005423-RA 44 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 98
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.84941101IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-324299IPR009057Homeodomain-like
SuperFamilySSF466893.94E-1743100IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-234499IPR006447Myb domain, plants
PfamPF002496.8E-104697IPR001005SANT/Myb domain
PfamPF143798.7E-10142165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143791.2E-9225250IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MYHHHNQATM FSSPRMPVPQ ERQLFLQGGN GSRDSNLVLS TDAKPRLKWT PDLHERFVEA  60
VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NTHGPTTSGA SKTVLMSPEK  120
MPEPNPAHTS SINVTHQPIK NIHINEALQM QIEVQRRLHQ QLEVHDPVYF QFKQNGLLPK  180
AETTTEAQNL QRQHPKNSRE KDVGGKKQKI LTHSESLVGA RYMHVQRCLQ LRIESQGKYL  240
QTVLEKAQET LGKQNIGVVG LEAAKLQLSE LVSKVSNQCL NLAFTEIEEQ KFMCHEQKIQ  300
PHKPMGDCSV DSCLTSCDGS HQREPDMQSS ELGLRPYIDS RFLEGNDINE NLKEHTNMLF  360
PKTKQQDITA CSDLSMSVGI GGDTREEFDK NTFQLDNHNY KLDSFRGNLD LNTRDESDAP  420
SSIRHLDLNG LSWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672721.10.0PREDICTED: myb-related protein 2-like isoform X2
TrEMBLA0A0K9RSG60.0A0A0K9RSG6_SPIOL; Uncharacterized protein
STRINGXP_010672720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.41e-100myb-related protein 1