PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_005410-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 26618.1 Da PI: 5.4966 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++W++eE+ l+ +v ++G+g W++Ia+ R+ ++ ++w++ AHYPO_005410-RA 5 KQKWSAEEEAALKAGVLKHGTGKWSAIAKDPAfgrilYLRSNVDIEDKWRN 55 79****************************999999988**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.227 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-15 | 2 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.28E-16 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 18.301 | 111 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 1.5E-6 | 115 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.8E-11 | 116 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-10 | 120 | 181 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.5E-6 | 122 | 177 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGAPKQKWSA EEEAALKAGV LKHGTGKWSA IAKDPAFGRI LYLRSNVDIE DKWRNMNVMP 60 CGFETKEKSE VKHKRAPMQS TTVKQEENVS SASDVPQNEE MPDVKPPVQI STPPQRSIER 120 LDKLILEAVA NSKNPGGSNE TAIASYIEDR CWTPPDFKHV LSANLKYLMS SGKLVKIDEE 180 LAKMTSVTPE EAAAAASRAV AEAEAAIAEA EEASREADEA EAYAKAAQAF VDAATKIAKR 240 EKHP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021724019.1 | 4e-86 | telomere repeat-binding factor 1-like isoform X3 | ||||
Swissprot | Q8VWK4 | 9e-60 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A0K9RDL1 | 7e-79 | A0A0K9RDL1_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010672702.1 | 5e-84 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 3e-61 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_005410-RA |
Publications ? help Back to Top | |||
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