PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005373-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 227aa    MW: 25685.6 Da    PI: 9.8463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005373-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-0786108123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+++F+ k +L++H r H
  AHYPO_005373-RA  86 FPCKKCDQRFKEKKELVVHRRIH 108
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-586108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.44886113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARTRNCPNF PPYAPCNSLE SIGSSKSVEE GEEVEGHPRS NYHARMEPLR TCQVGFPYFK  60
DNGKTPLEFE DDCPKVLSSY EILYCFPCKK CDQRFKEKKE LVVHRRIHRP IKNGETSAKR  120
RSNKHVRVPP PPVSVPQKMA MVGVKTQSRA LRVVKPDNMK RVLSNPRDPL DLSHVMSRGP  180
HTTTLPSFSP FGCYGTQPYL DLIQGIHDGS GVWTFVKQIP NKSFCK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-