PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005149-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 790aa MW: 86912.8 Da PI: 5.7207

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005149-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	393.9	1.8e-120	419	774	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cAeavs++++ +a+++L ++ e a+p g++ qR+aayf eA++arl +s ++ lp+ + ++ ++a+++f+ +sP++kfsh AHYPO_005149-RA 419 LTLLLQCAEAVSAEQFDQANKTLVEITEWATPFGTSAQRVAAYFSEAISARLISSRLGIHTLLPSIPH----YQKLVSAFQVFNGISPFVKFSH 508 579*************************************************88888877777666....589999************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e le+tg+rL++f e+lg+pfef + va+++ +l AHYPO_005149-RA 509 FTANQAIQEAFQREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEDLEKTGKRLSEFTEKLGLPFEFIP-VAEKIGNL 597 **************************************************....***********************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +le+L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv++veq++++ +++Fl rf+ea++yysalfdsl a+++++seer+ AHYPO_005149-RA 598 DLEKLHVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTIVEQDLSR-TGTFLGRFVEAIHYYSALFDSLGASYGEDSEERH 684 **************9..999999999999....****************99.899*************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE++ll+rei+nv+a g++r + + + +Wre+l++ GF+ ++l +aa+q+ lll +++sdgy++ e++gsl lgWkd L+++SaWr AHYPO_005149-RA 685 MVEQQLLAREIRNVLAIGGSSRSGDPK-FPSWREKLQQLGFRGISLAGNAAAQVTLLLGMFPSDGYTLVEDNGSLKLGWKDLCLLTASAWR 774 *****************988887.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.373	392	754	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-118	419	774	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MAASPSFFPD PNILLSPYYP PPPSSPYYIN GGDSNLPSTS FSSTPFSNYY PVTISSPYNL 60 MSSSSNNLQS SSIDETITNK MVRKRTASEM ERSDSRPNEV IDYCLITSVN DSELFISALE 120 SLTGCNRINL GNNGSDQQPL VCGFSGLPLF PPVVERNAMG SNTRSNLGNG SGSGSGEDPG 180 WIDGIVKDLI QSSNFVSISQ LIQNVREIIY PCNPNLGSVI EFRLRSLSES PITPPQLSLP 240 QPTTISLHNH HKLQNELTGF TRINTNTTGN SNQQTRLPNK NYLNMSEMDY IQSLGCIEGS 300 ANLNWGIITA VMPQPSLSRP ILTHVDDSCV GGNNPNPNPN PSDVERNFDQ NHENLNITNS 360 RDSDHAVGST IGTGESVNVT PPAPPTPLPP RPQIIPVLKA REREEYRQRK RDEEGLHLLT 420 LLLQCAEAVS AEQFDQANKT LVEITEWATP FGTSAQRVAA YFSEAISARL ISSRLGIHTL 480 LPSIPHYQKL VSAFQVFNGI SPFVKFSHFT ANQAIQEAFQ REERVHIIDL DIMQGLQWPG 540 LFHILASRPG GPPFVRLTGL GTSMEDLEKT GKRLSEFTEK LGLPFEFIPV AEKIGNLDLE 600 KLHVSKREAV AVHWLQHSLY DVTGSDTNTL WLLQRLAPKV VTIVEQDLSR TGTFLGRFVE 660 AIHYYSALFD SLGASYGEDS EERHMVEQQL LAREIRNVLA IGGSSRSGDP KFPSWREKLQ 720 QLGFRGISLA GNAAAQVTLL LGMFPSDGYT LVEDNGSLKL GWKDLCLLTA SAWRPSNVHT 780 MSTVCTRSQ*

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MAASPSFFPD PNILLSPYYP PPPSSPYYIN GGDSNLPSTS FSSTPFSNYY PVTISSPYNL  60
MSSSSNNLQS SSIDETITNK MVRKRTASEM ERSDSRPNEV IDYCLITSVN DSELFISALE  120
SLTGCNRINL GNNGSDQQPL VCGFSGLPLF PPVVERNAMG SNTRSNLGNG SGSGSGEDPG  180
WIDGIVKDLI QSSNFVSISQ LIQNVREIIY PCNPNLGSVI EFRLRSLSES PITPPQLSLP  240
QPTTISLHNH HKLQNELTGF TRINTNTTGN SNQQTRLPNK NYLNMSEMDY IQSLGCIEGS  300
ANLNWGIITA VMPQPSLSRP ILTHVDDSCV GGNNPNPNPN PSDVERNFDQ NHENLNITNS  360
RDSDHAVGST IGTGESVNVT PPAPPTPLPP RPQIIPVLKA REREEYRQRK RDEEGLHLLT  420
LLLQCAEAVS AEQFDQANKT LVEITEWATP FGTSAQRVAA YFSEAISARL ISSRLGIHTL  480
LPSIPHYQKL VSAFQVFNGI SPFVKFSHFT ANQAIQEAFQ REERVHIIDL DIMQGLQWPG  540
LFHILASRPG GPPFVRLTGL GTSMEDLEKT GKRLSEFTEK LGLPFEFIPV AEKIGNLDLE  600
KLHVSKREAV AVHWLQHSLY DVTGSDTNTL WLLQRLAPKV VTIVEQDLSR TGTFLGRFVE  660
AIHYYSALFD SLGASYGEDS EERHMVEQQL LAREIRNVLA IGGSSRSGDP KFPSWREKLQ  720
QLGFRGISLA GNAAAQVTLL LGMFPSDGYT LVEDNGSLKL GWKDLCLLTA SAWRPSNVHT  780
MSTVCTRSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	403	775	4	380	Protein SCARECROW
5b3h_A	0.0	403	775	3	379	Protein SCARECROW
5b3h_D	0.0	403	775	3	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860776.1	0.0	protein SCARECROW 1
Swissprot	Q9AVK4	0.0	SCR_PEA; Protein SCARECROW
TrEMBL	A0A0K9RLQ2	0.0	A0A0K9RLQ2_SPIOL; Uncharacterized protein
STRING	XP_010691407.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005149-RA