PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005120-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 885aa MW: 97974.6 Da PI: 6.1373

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005120-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.1	2.9e-07	604	629	2	27
RWP-RK 2 ekeisledlskyFslpikdAAkeLgv 27 +k+isl++l++yF++++kdAAk++gv AHYPO_005120-RA 604 QKSISLDVLRQYFAGSLKDAAKNIGV 629 799**********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54277	6.87E-22	791	882	No hit	No description
PROSITE profile	PS51745	21.472	798	881	IPR000270	PB1 domain
SMART	SM00666	1.1E-22	798	881	IPR000270	PB1 domain
CDD	cd06407	3.23E-40	799	878	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.3E-21	799	879	No hit	No description
Pfam	PF00564	8.4E-16	800	879	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence Send to blast
MDDGSFTPNN PAVFGNIYND LMDQLLDEGC WLQTTDGSNL LQSGQGSGQG LGPGQGPGSV 60 PSISRGLSLS YPYYPLFPSL EPNSSSLTAP PHLSSYQKWI PKAEHQTPDS EKQDPENPQT 120 TTTQVQNRCW DGNELNRILW IAPKANSDSS SPVKDRLVKA IYNLKEMNKH RDVLIQLWVP 180 IRKGVHSFLT TVEQPYFYQD SSQRLQNFRD VSEKYEFLAD EDTKQALGLP GRVFLGKAPE 240 WTPDVRLFRH DEYPRINYAR KYDVRGSIAL PVFEKGSGDS LGVVEIIMTT DDFDYRPEVE 300 SVCKALETFH LRSSGTLNMA QEKAGKGSNE AVHPEILNVV RTVCDTFDLP LAQTWAPCTQ 360 QRKAGCWHSE NNSNCISVIE SACYVRDQGV QDFHKACSHH HLLRKQGGIV GKAFETNQPC 420 YATDVTEFSK VEYPLSHHAK KFGLRGAVAL RLRGLYSEVY DYALELYLPS NIQEKGLAFH 480 ARICQAVTTI MQQNCRYLQL VTDHGFEEKV KEAFWLSQMT EPQRKGKEVV VSLEFGEEEP 540 SKGFKVMNWS ENEPSLQLGQ ALSDENTNQD NSGSKGISGS GSSSGGRFPL GCRKAGEKRR 600 TKTQKSISLD VLRQYFAGSL KDAAKNIGVI DSVQGAEGSI QLSSFYTNFP ELNSPNAQPK 660 PNQTSSINLN NQPKQQLTTQ PEGNVFPSGA TTSNSPASTS SSQTSTSSYC FSSGAKLTSS 720 AVTTIASESK EALAVEDDPG GSLKRARSEA ELQALNKKET NQNLERSQSN KTLAEHPSFE 780 TLPPLPVTKS LLSREAGVFR AKASYGEEKV RFSILPNMGF LDLQQEIVKR FSLEDLSKMG 840 IKYLDDDKEW VLLTCDADLE ECIDIHKSSG SHTIKLSISP LSSLA

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence Send to blast

MDDGSFTPNN PAVFGNIYND LMDQLLDEGC WLQTTDGSNL LQSGQGSGQG LGPGQGPGSV  60
PSISRGLSLS YPYYPLFPSL EPNSSSLTAP PHLSSYQKWI PKAEHQTPDS EKQDPENPQT  120
TTTQVQNRCW DGNELNRILW IAPKANSDSS SPVKDRLVKA IYNLKEMNKH RDVLIQLWVP  180
IRKGVHSFLT TVEQPYFYQD SSQRLQNFRD VSEKYEFLAD EDTKQALGLP GRVFLGKAPE  240
WTPDVRLFRH DEYPRINYAR KYDVRGSIAL PVFEKGSGDS LGVVEIIMTT DDFDYRPEVE  300
SVCKALETFH LRSSGTLNMA QEKAGKGSNE AVHPEILNVV RTVCDTFDLP LAQTWAPCTQ  360
QRKAGCWHSE NNSNCISVIE SACYVRDQGV QDFHKACSHH HLLRKQGGIV GKAFETNQPC  420
YATDVTEFSK VEYPLSHHAK KFGLRGAVAL RLRGLYSEVY DYALELYLPS NIQEKGLAFH  480
ARICQAVTTI MQQNCRYLQL VTDHGFEEKV KEAFWLSQMT EPQRKGKEVV VSLEFGEEEP  540
SKGFKVMNWS ENEPSLQLGQ ALSDENTNQD NSGSKGISGS GSSSGGRFPL GCRKAGEKRR  600
TKTQKSISLD VLRQYFAGSL KDAAKNIGVI DSVQGAEGSI QLSSFYTNFP ELNSPNAQPK  660
PNQTSSINLN NQPKQQLTTQ PEGNVFPSGA TTSNSPASTS SSQTSTSSYC FSSGAKLTSS  720
AVTTIASESK EALAVEDDPG GSLKRARSEA ELQALNKKET NQNLERSQSN KTLAEHPSFE  780
TLPPLPVTKS LLSREAGVFR AKASYGEEKV RFSILPNMGF LDLQQEIVKR FSLEDLSKMG  840
IKYLDDDKEW VLLTCDADLE ECIDIHKSSG SHTIKLSISP LSSLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021776282.1	0.0	protein NLP2-like
Refseq	XP_021776283.1	0.0	protein NLP2-like
TrEMBL	A0A0K9QYB0	0.0	A0A0K9QYB0_SPIOL; Uncharacterized protein
STRING	XP_010690230.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005120-RA