PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004848-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 205aa    MW: 22676.2 Da    PI: 8.4857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004848-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1960109255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  AHYPO_004848-RA  60 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDKAARSMRG 109
                      678******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-3060117IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2160118IPR016177DNA-binding domain
SMARTSM003809.5E-3560123IPR001471AP2/ERF domain
PROSITE profilePS5103220.78460117IPR001471AP2/ERF domain
CDDcd000181.23E-3160116No hitNo description
PRINTSPR003672.2E-86172IPR001471AP2/ERF domain
PfamPF008473.3E-1261109IPR001471AP2/ERF domain
PRINTSPR003672.2E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
EHASTSNPTS KTTTLFLSSF SLNSKLHHLA NNLQLTHTLN MFKTKTTKTT QQPENPPAVK  60
FLGVRRRPWG RYAAEIRDPS TKERHWLGTF DTAEEAALAY DKAARSMRGP RARTNFVYSD  120
MPPGTSVTSI PCPDEAHVIN HSKQSTHQQI HGSWVDPFDG GATSDYMGFD STMAGYVHSP  180
LFSSMPPVEH GLDPFNLGSS SYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1961116359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-19601161471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735788.12e-52ethylene-responsive transcription factor LEP-like
SwissprotQ9M6446e-44LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A068UWK53e-50A0A068UWK5_COFCA; Uncharacterized protein
STRINGXP_010682226.13e-50(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-34ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]