PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004794-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 353aa    MW: 38143.1 Da    PI: 8.0999
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004794-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP64.32.8e-2080140278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls++++yhrrhkvCe hsk+p v++ g                efDe+krsCr+rL++hn+rrrk+q+
  AHYPO_004794-RA  80 CLVDGCKSDLSKCRDYHRRHKVCELHSKTPRVTIGG----------------EFDEGKRSCRKRLEGHNRRRRKPQP 140
                      *********************************997................8*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-1573115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.13677138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-2578143IPR004333Transcription factor, SBP-box
PfamPF031103.9E-980115IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
NYFDLGELEK GGIATISAIF GSPSFESESV KGESLVDLKL GRSSDIGKGF TTSLMDPFAA  60
SAGSSKRPRT PSSSGQVVSC LVDGCKSDLS KCRDYHRRHK VCELHSKTPR VTIGGEFDEG  120
KRSCRKRLEG HNRRRRKPQP DPLPVNPGSF ISTTNQASSI VSTTWSGAVK TESNQTLYST  180
SSSIPSSFSH AYRSRQFPFL QVPESPLPGV SLAGQTIHHD PNNNDGSSSN GNTNTQKSLF  240
CNGLNQVLDS DRALSLLSSS SAETPEMGLG RMIHHPSPIN PTRSMLPSLH YSNLTPPTQY  300
AGPSQGHGLE GHPESSGLFS NLRNNNFCQD VFQNDTDPSP ASGSHQTLSF TWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-1672137384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120137KRSCRKRLEGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745311.11e-170squamosa promoter-binding-like protein 13A
TrEMBLA0A0K9R8X41e-157A0A0K9R8X4_SPIOL; Uncharacterized protein
STRINGXP_010682726.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-29SBP family protein