PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004642-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 582aa MW: 64918.1 Da PI: 6.117

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004642-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	422.1	4.8e-129	211	580	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ecA a+s++ + ++l+++ ++++s +g+p+qRl ay+ e+L ar +s++ +y+al+++e ++ l++++l++e++P+lkf+ AHYPO_004642-RA 211 LKKLLVECACALSENRFDDFEKLVEQARKRVSISGEPIQRLGAYMIEGLVARKESSGNCIYRALRCKEPL---GKDLLSYMHLLYEICPYLKFG 301 5799***************************************************************8...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 +++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+ + +le++g+rLa + e+ ++p+ef++ v l AHYPO_004642-RA 302 YMAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPGGAPYVRITGIDDPVSQyaRGASLEAVGKRLATLSERYNIPVEFHA-VPVFL 394 ****************************************************9999999**********************.7999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++ e+L+v+pgE+laVn+ lqlh+++desv+++++rd +L++vksl P+v ++veqe+++n+++Fl+rf+eal+yysa+f+s+++++pr+++ AHYPO_004642-RA 395 PEVTKEMLDVRPGETLAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLGPRVTTLVEQESNTNTTPFLTRFIEALSYYSAMFESIDVTMPRDKK 488 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eri+vE+++l+++ivn++aceg er+erhe l+kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWkdr L+s+SaW AHYPO_004642-RA 489 ERISVEQHCLAKDIVNIIACEGIERVERHELLGKWKSRFTMAGFQQYPLSSYVNSVIRELLRCYS-EHYTLVEKDGAMLLGWKDRMLISASAW 580 *********************************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.557	185	562	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-126	211	580	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MDSRKIFGYN VTGADTSYMS SQYSPEVPNK IFGPLKFNFK NSPISPFSSH FDCETATTLS 60 DSREHHSSSE SLSGKSPCNS PLETNSYYQR FNSSPSDDSH PGIVPPTASG TSYPRNSDYE 120 ANMKHALQEL ETVLMGDESV GGVSRQNVIS SERLGSSSCN PHGLHGSQFQ STTAVGDSKS 180 EDDNGHHNEK RHNAAMEEEI SPELKNSSID LKKLLVECAC ALSENRFDDF EKLVEQARKR 240 VSISGEPIQR LGAYMIEGLV ARKESSGNCI YRALRCKEPL GKDLLSYMHL LYEICPYLKF 300 GYMAANGAIA EACRNEDRIH IIDFQIAQGT QWLTLLQALA ARPGGAPYVR ITGIDDPVSQ 360 YARGASLEAV GKRLATLSER YNIPVEFHAV PVFLPEVTKE MLDVRPGETL AVNFPLQLHH 420 TPDESVDVNN PRDGLLRMVK SLGPRVTTLV EQESNTNTTP FLTRFIEALS YYSAMFESID 480 VTMPRDKKER ISVEQHCLAK DIVNIIACEG IERVERHELL GKWKSRFTMA GFQQYPLSSY 540 VNSVIRELLR CYSEHYTLVE KDGAMLLGWK DRMLISASAW H*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MDSRKIFGYN VTGADTSYMS SQYSPEVPNK IFGPLKFNFK NSPISPFSSH FDCETATTLS  60
DSREHHSSSE SLSGKSPCNS PLETNSYYQR FNSSPSDDSH PGIVPPTASG TSYPRNSDYE  120
ANMKHALQEL ETVLMGDESV GGVSRQNVIS SERLGSSSCN PHGLHGSQFQ STTAVGDSKS  180
EDDNGHHNEK RHNAAMEEEI SPELKNSSID LKKLLVECAC ALSENRFDDF EKLVEQARKR  240
VSISGEPIQR LGAYMIEGLV ARKESSGNCI YRALRCKEPL GKDLLSYMHL LYEICPYLKF  300
GYMAANGAIA EACRNEDRIH IIDFQIAQGT QWLTLLQALA ARPGGAPYVR ITGIDDPVSQ  360
YARGASLEAV GKRLATLSER YNIPVEFHAV PVFLPEVTKE MLDVRPGETL AVNFPLQLHH  420
TPDESVDVNN PRDGLLRMVK SLGPRVTTLV EQESNTNTTP FLTRFIEALS YYSAMFESID  480
VTMPRDKKER ISVEQHCLAK DIVNIIACEG IERVERHELL GKWKSRFTMA GFQQYPLSSY  540
VNSVIRELLR CYSEHYTLVE KDGAMLLGWK DRMLISASAW H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-59	238	581	30	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021725970.1	0.0	chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A0K9RKI5	0.0	A0A0K9RKI5_SPIOL; Uncharacterized protein
STRING	XP_010694285.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-164	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004642-RA

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]